Job Description P69856 Confidence 95.70% Date Thu Jan 5 12:12:14 GMT 2012 Rank 17 Aligned Residues 159 % Identity 11% Template c3brzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:todx; PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx Resolution 3.20 Å

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		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.																																																		.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	Q	V	E	V	N	Y	A	I	K	L	D	D	Q	W	T	V	R	P	G	M	L	T	H	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	N	G	T	R
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	R	A	P	I	G	F	S	Y	Q	A	T	S	K	L	T	F	G	A	S	V	D	L	V	W	T	S	L	N	L	E	L	L	L	P	S	S	Q	V	G	A	L	T	A	Q	G	N	L	S	G	G	L	V	P	S	L	A	G	F	V	G	T	G	G	A	A	H	F	S	L	S	A	G	G	A	V	D	A	V	G
Template Known Secondary structure												S	S	S	S																															T	T					S						T	T	T	S	G	G	G												T	T
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.																			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	G	P	Y	V	K	L	S	W	D	A	T	K	D	L	N	F	G	I	R	Y	R	Y	D	W	K	A	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	Q	D	L	S	G	D	M	S	R	D	N	V	H	R	W	D	G	Y	V	T	Y	H	I	N	S	D	F	T	F	A	W	Q
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	G	G	R	L	G	L	T	Y	K	L	T	D	N	T	V	L	G	A	M	Y	N	F	K	T	S	V	G	D	L	E	G	K	A	T	L	S	A	I	S	G	D	G	A	V	L	P	L	D	G	D	I	R	V	K	N	F	E	M	P	A	S	L	T	L	G	L	A	H	Q	F	N	E	R	W	V	V	A	A	D
Template Known Secondary structure													S	S	S											B																T	T	S																B												S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.																	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	T	L	Y	S	K	Q	N	D	Y	R	Y	A	N	H	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	W	A	T	E	N	A	F	V	L	Q	Y	H	M	T	P	D	I	T	P	Y	I	E	Y	D	Y	L	D	R	Q	G	V	Y	N	G	R	D	N	L	S	E	N	S	Y	R	I	G	V
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Conservation																																																															.	.
Template Sequence		I	K	R	A	Y	W	G	D	V	M	D	S	M	N	V	A	F	I	S	Q	L	G	G	I	D	V	A	L	P	H	R	Y	Q	D	I	T	V	A	S	I	G	T	A	Y	K	Y	N	N	D	L	T	L	R	A	G	Y	S	Y	A	Q	L	.	.	I	L	P	V	I	P	A	Y	L	K	R	H	V	T	F	G	G
Template Known Secondary structure								T	T			S									S	S																									S	S	S	S													.	.			T	T	S					S
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.			360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		235	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Y	D	F
Template Known Secondary structure					S
Template Predicted Secondary structure
Template SS confidence
		383	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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