Job Description P69856 Confidence 84.76% Date Thu Jan 5 12:12:14 GMT 2012 Rank 32 Aligned Residues 154 % Identity 14% Template c2y0kA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:pyroglutatmate porin opdo; PDBTitle: crystal structure of pseudomonas aeruginosa opdo Resolution 2.30 Å

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		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.					.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.													.	.	.	.	140	.	.	.
Predicted Secondary structure																														.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	E	V	N	Y	A	I	K	L	D	D	Q	W	T	V	R	P	G	M	L	T	H	F	S	S	N	G	T	.	.	.	.	R	Y	G	P	Y	V	K	L	S	W	D	A	T	K	D	L	N	F	G	I	R	Y	R	Y	D	W	K	A	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	Q	Q	D	L	S	G
Query Conservation																														.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.													.																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.
Template Sequence		A	G	L	V	H	T	L	D	L	G	R	S	L	K	S	D	L	R	F	A	R	A	S	E	D	G	G	F	R	E	L	D	N	R	A	F	G	A	L	F	S	L	R	L	.	G	A	H	A	V	A	A	G	Y	Q	R	I	S	G	D	D	P	Y	P	Y	I	A	G	S	D	P	Y	L	V	N	F	I	Q	I	G
Template Known Secondary structure																											T	T	S																	.	T	T												S	S	S					B	T	T	S					T	T			S	S
Template Predicted Secondary structure																																														.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.			.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.																																							.	.	.	.
Query SS confidence																						.	.																																							.	.	.	.
Query Sequence		D	M	S	R	D	N	V	H	R	W	D	G	Y	V	T	Y	H	I	N	S	.	.	D	F	T	F	A	W	Q	T	T	L	Y	S	K	Q	N	D	Y	R	Y	A	N	H	K	K	W	A	T	E	N	A	F	V	L	Q	Y	H	M	T	.	.	.	.	P	D	I	T	P	Y	I	E	Y	D	Y	L	D	R	Q	G
Query Conservation																						.	.																																							.	.	.	.
Alig confidence																						.	.																																							.	.	.	.													.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		D	F	G	N	V	D	E	R	S	W	Q	L	R	Y	D	Y	D	F	G	A	L	G	L	P	G	L	S	F	M	S	R	Y	V	S	G	D	N	V	A	R	G	A	A	N	D	G	K	E	W	E	R	N	T	D	L	G	Y	V	V	Q	S	G	P	L	K	N	L	G	V	K	W	R	N	A	T	V	.	.	.	.
Template Known Secondary structure					S	T	T													T	T	T	T		T	T																T	T																			S	S	T	T	T	T											.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	N	G	R	D	N	L	S	E	N	S	Y	R	I	G	V	S	F	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	S	N	F	A	N	D	L	D	E	N	R	L	I	L	S	Y	S	L	A	L
Template Known Secondary structure				S	S	S
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions