Job Description P0AG76 Confidence 100.00% Date Thu Jan 5 11:28:20 GMT 2012 Rank 4 Aligned Residues 340 % Identity 19% Template c3av0A_ PDB info PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11-rad50 bound to atp s Resolution 3.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		M	R	I	L	H	T	S	D	W	H	L	G	Q	N	F	Y	S	K	S	.	R	E	A	E	H	Q	A	F	L	D	W	L	L	E	T	A	Q	T	H	Q	V	D	A	I	I	V	A	G	D	V	F	D	T	G	S	P	P	S	Y	A	R	T	L	Y	N	R	F	V	V	N	L	Q	Q	T	G	C	H	L	V	V
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		M	M	F	V	H	I	A	D	N	H	L	G	Y	R	Q	Y	N	L	D	D	R	E	K	D	I	Y	D	S	F	K	L	C	I	K	K	I	L	E	I	K	P	D	V	V	L	H	S	G	D	L	F	N	D	L	R	P	P	V	K	A	L	R	I	A	M	Q	A	F	K	K	L	H	E	N	N	I	K	V	Y	I
Template Known Secondary structure												B	T			G	G	G																					T	T			S						S		S	B	S	S	S	S																			T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	G	N	H	D	S	V	A	T	L	N	E	S	R	D	I	M	A	F	L	N	T	T	V	V	A	S	A	G	H	A	P	Q	I	L	P	R	R	D	G	T	P	G	A	V	L	C	P	I	P	F	L	R	P	R	D	I	I	T	S	Q	A	G	L	N	G	I	E	K	Q	Q	H	L	L	A	A	I	T	D
Query Conservation
Alig confidence																													.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	G	N	H	E	M	P	R	R	L	G	E	E	S	P	L	A	L	L	K	D	Y	V	K	I	L	.	.	.	.	.	D	G	K	D	V	I	N	V	N	G	E	E	I	F	I	C	G	T	Y	Y	H	K	K	S	K	R	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					G	G	G	S		S	S	T	T	S			G	G	G	G	G	T	T	T					.	.	.	.	.	S								T	T													S	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																													.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.						.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		Y	Y	Q	Q	H	Y	A	D	A	C	K	L	R	G	D	Q	P	L	P	I	I	A	T	G	H	L	T	T	V	G	A	S	K	S	D	A	V	R	D	I	Y	I	G	T	L	D	A	F	P	A	Q	N	F	P	P	A	D	Y	I	A	L	G	H	I	H	R	A	Q	I	I	G	.	G	M	E	H	V	R	Y	C
Query Conservation																																																																									.
Alig confidence		.	.																																			.	.	.	.	.	.	.	.	.	.																										.
Template Conservation		.	.																																			.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	M	L	D	K	L	K	N	F	E	S	E	A	K	N	Y	K	K	K	I	L	M	L	H	Q	G	I	N	P	Y	I	P	L	D	Y	.	.	.	.	.	.	.	.	.	.	E	L	E	H	F	D	L	P	K	F	S	Y	Y	A	L	G	H	I	H	K	R	I	L	E	R	F	N	D	G	I	L	A	Y	S
Template Known Secondary structure		.	.														T		S	S										T	T	T	S	S	S	S		.	.	.	.	.	.	.	.	.	.	S	S		G	G	G	S				S						S			S							S	S	S
Template Predicted Secondary structure		.	.																																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
				136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.											170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.					.	.	.	.	.	.	.	.	260	.	.	.	.	.			.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure															.	.	.	.															.	.
Query SS confidence															.	.	.	.															.	.
Query Sequence		G	S	P	I	P	L	S	F	D	E	C	G	K	.	.	.	.	S	K	Y	V	H	L	V	T	F	S	N	G	K	L	.	.	E	S	V	E	N	L	N	V	P	V	T	Q	P	M	A	V	L	K	G	D	L	A	S	I	T	A	Q	L	E	Q	W	R	D	V	S	Q	E	P	P	V	W	L	D	I	E	I	T
Query Conservation															.	.	.	.															.	.
Alig confidence															.	.	.	.															.	.
Template Conservation
Template Sequence		G	S	T	E	I	I	Y	R	N	E	Y	E	D	Y	K	K	E	G	K	G	F	Y	L	V	D	F	S	G	N	D	L	D	I	S	D	I	E	K	I	D	I	E	C	R	E	F	V	E	V	N	I	K	D	K	K	S	F	N	E	A	V	N	K	I	E	R	C	K	N	K	P	V	V	F	G	K	I	K	R	E
Template Known Secondary structure				S	S			S	G	G	G	T								S									S	S	S			G	G	G																		S												T	S	S	S	S										G	G
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	E	Y	L	H	D	I	Q	R	K	I	Q	A	L	T	E	S	L	P	V	E	V	L	L	V	R	R	S	R	E	Q	R	E	R	V	L	A	S	Q	Q	R	E	T	L	S	E	L	S	V	E	E	V	F	N	R	R	L	A	L	E	E	L	D	E	S	Q	Q	Q	R	L	Q	H	L	F	T	T
Query Conservation
Alig confidence								.	.	.	.	.	.																												.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.																												.	.	.	.	.	.
Template Sequence		F	K	P	W	F	D	.	.	.	.	.	.	T	L	K	D	K	I	L	I	N	K	A	I	I	V	D	D	E	F	I	D	M	P	D	N	V	D	I	.	.	.	.	.	.	E	S	L	N	I	K	E	L	L	V	D	Y	A	N	R	Q	G	I	D	G	D	L	V	L	S	L	Y	K	A	L	L	N
Template Known Secondary structure		G	S	T	T	T	G	.	.	.	.	.	.	G	G	T	T	T		S									S	S			S		S	S					.	.	.	.	.	.																	T	S														T
Template Predicted Secondary structure								.	.	.	.	.	.																												.	.	.	.	.	.
Template SS confidence
		284	.	.	.	.	.							290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.							.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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