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Job DescriptionP43340
Confidence99.93%DateThu Jan 5 12:02:20 GMT 2012
Rank28Aligned Residues173
% Identity12%Templatec2zkiH_
PDB info PDB header:transcriptionChain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872)
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70.........80...
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Query Sequence  ERIYLVWAHPRHDSLTAHIADAIHQRAMERKIQVTELDLYRRNFNPVMTPEDEPDWKNMDKRYSPEVHQLYSELLEHDTL
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Template Sequence  PNILVLFYG. . . YGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPF. . . . . . . DKVKDIPEVTLDDMRWADGF
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...SST




S
GGG
TT

G.......GGSTTS
B


S
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   5....10... ......20.........30.........40.........50.... .....60.........70....
 
   84.....90.........100.........110.........120.........130.........140.........150.........160...
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Query Sequence  VVVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGDKESFVQMGWEKNISDYLKNMCSYLGIEDADV
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Template Sequence  AIGSPTRYGNMAGGLKTFLDTTAILW. . . . KDNVLYGKPVTFFTEASTVHGGHE. . . . . . TTILTMSTYAYHFGMIIVPI
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BTTB

TT....TTTTTTT


BSSTTSSSS......TT



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   75....80.........90.........100 .........110.........120.... .....130.........140....
 
   164..... 170.........180.........190......
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Query Sequence  TFLCNT. . . . . . . . . . . . . . . . . VVFDGEELHASYYQSLLSQVRDMVDAL
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Template Sequence  GYGIPELFQTTTGGGPYGATHLGSKEELDEMERKIARFQGKRITEVAKAI
Template Known Secondary structure  TT
ST
SSS
BTTB


BSSSS


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   145....150.........160.........170.........180.........190....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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