Job Description P43340 Confidence 42.17% Date Thu Jan 5 12:02:20 GMT 2012 Rank 181 Aligned Residues 78 % Identity 10% Template c2dg2D_ PDB info PDB header:protein binding Chain: D: PDB Molecule:apolipoprotein a-i binding protein; PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein Resolution 2.45 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	E	R	I	Y	L	V	W	A	H	P	R	H	D	S	L	T	A	H	I	A	D	A	I	H	Q	R	A	M	E	R	K	I	Q	V	T	E	L	D	L	Y	R	R	N	F	N	P	V	M	T	P	E	D	E	P	D	W	K	N	M	D	K	R	Y	S	P	E	V	H	Q	L	Y	S	E	L	L	E	H	D
Query Conservation
Alig confidence													.	.	.	.																												.
Template Conservation													.	.	.	.																												.
Template Sequence		S	P	P	T	V	L	V	I	C	G	P	.	.	.	.	G	N	N	G	G	D	G	L	V	C	A	R	H	L	K	L	F	G	Y	Q	P	T	I	Y	Y	P	K	.	R	P	N	K	P	L	F	T	G	L	V	T	Q	C	Q	K	X	D	I	P	F	L	G	E	X	P	P	E	P	X	X	V	D	E	L	Y	E
Template Known Secondary structure		S	S									S	.	.	.	.	S																T	T								S	S	.				S													T	T			B		S	S			S	S									S
Template Predicted Secondary structure													.	.	.	.																												.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.					.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		82	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		152	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions