 |
Job Description | P64554 | Confidence | 23.77% | Date | Wed Jan 25 15:21:00 GMT 2012 |
Rank | 114 | Aligned Residues | 55 |
% Identity | 13% | Template | c1jaeA_ |
PDB info |
PDB header:glycosidase | Chain: A: PDB Molecule:alpha-amylase; |
PDBTitle: structure of tenebrio molitor larval alpha-amylase
|
Resolution | 1.65 Å |
|
 |
  |   |
160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | |
. | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | . |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | P | V | G | R | V | R | D | I | E | A | L | D | E | L | L | A | T | . |
L | T | D | D | K | P | R | V | I | A | L | Q | P | I | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Q | K | D | D | A | T | R | L | C | I | E | T | C | I | A | R | N | W | R | L | S |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   | . |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |
|   |   |   |   |
|   |   |   |
|   |
|
|
|
|   |
|
|
|
|   |
|
|
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |
|
|
|
|   |   |   |
|
|   |
|
|   |   |   |
|
|   |   |
|
|
|   |
|
|   |   |
|
|   |   |
|
|   |
|
|
Template Sequence |   |
I | V | H | L | F | E | W | K | W | N | D | I | A | D | E | C | E | R | F | L | Q | P | Q | G | F | G | G | V | Q | I | S | P | P | N | E | Y | L | V | A | D | G | R | P | W | W | E | R | Y | Q | P | V | S | Y | I | I | N | T | R | S | G | D | E | S | A | F | T | D | M | T | R | R | C | N | D | A | G | V | R | I | Y |
Template Known Secondary structure |   |
 |  |  |  | T | T |
|
|  |  |  |  |  |  |  |  |  |  | T | T | T | T | T | T |  |  |  |  |  |
|
|
|
| S |
| B | B |
|
| T | T |
|
| G | G | G | G | G | S | B |
|
| S |
| S |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
13 | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . |
  |
  |   |
214 |
Predicted Secondary structure |   |
 |
Query SS confidence |   |
|
Query Sequence |   |
M |
Query Conservation |   |
  |
Alig confidence |   |
|
Template Conservation |   |
|
Template Sequence |   |
V |
Template Known Secondary structure |   |
 |
Template Predicted Secondary structure |   |
 |
Template SS confidence |   |
|
  |   |
93 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|