Job Description P32170 Confidence 100.00% Date Thu Jan 5 11:49:48 GMT 2012 Rank 7 Aligned Residues 308 % Identity 14% Template c3ktcB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_050048.1) from2 erwinia carotovora atroseptica scri1043 at 1.54 a resolution Resolution 1.54 Å

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		32	.	.		.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.							.
Query SS confidence					.							.
Query Sequence		R	L	P	.	V	S	M	H	C	W	.	Q	G	D	D	V	S	G	F	E	N	P	E	G	S	L	T	G	G	I	Q	A	T	G	N	Y	P	G	K	A	R	N	A	S	E	L	R	A	D	L	E	Q	A	M	R	L	I	P	G	P	K	R	L	N	L	H	A	I	Y	L	E	S	D	T	P	V	S	R	D	Q
Query Conservation					.							.
Alig confidence					.							.										.			.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.					.	.	.	.	.	.	.	.	.
Template Conservation																						.			.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.					.	.	.	.	.	.	.	.	.
Template Sequence		N	Y	P	E	F	G	A	G	L	W	H	F	A	N	Y	I	D	R	Y	A	.	V	D	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	G	P	A	L	S	T	I	D	Q	I	N	A	A	K	E	V	G	E	L	S	Y	.	.	.	.	V	D	L	P	.	.	.	.	.	.	.	.	.	Y	P	F	T	P
Template Known Secondary structure										G	G	G	G	S					S	S		.	T	T	.	.	.	.	.	.	.	.	.	.	.	.		S	S																S	S				.	.	.	.					.	.	.	.	.	.	.	.	.		S		S	T
Template Predicted Secondary structure																						.			.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.					.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.													.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.					50	.	.	.										.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																							.																																																										.
Query SS confidence																							.																																																										.
Query Sequence		I	K	P	E	H	F	K	N	W	V	E	W	A	K	A	N	Q	L	G	L	D	.	F	N	P	S	C	F	S	H	P	L	S	A	D	G	F	T	L	S	H	A	D	D	S	I	R	Q	F	W	I	D	H	C	K	A	S	R	R	V	S	A	Y	F	G	E	Q	L	G	T	P	S	V	M	N	I	W	I	P	.
Query Conservation																							.																																																										.
Alig confidence			.	.																			.										.					.																								.	.	.	.											.					.
Template Conservation			.	.																													.					.																								.	.	.	.											.
Template Sequence		G	.	.	V	T	L	S	E	V	K	D	A	L	K	D	A	G	L	K	A	I	G	I	T	P	E	I	Y	L	Q	K	.	W	S	R	G	.	A	F	T	N	P	D	P	A	A	R	A	A	A	F	E	L	X	H	E	S	A	G	I	.	.	.	.	V	R	E	L	G	A	N	Y	V	K	.	V	W	P	G	Q
Template Known Secondary structure		T	.	.														T										T	T	S	G	G	.	G	T	T		.	S	T	T		S	S																		.	.	.	.					T		S				.				T	T
Template Predicted Secondary structure			.	.																													.					.																								.	.	.	.											.
Template SS confidence
		59			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.					.	.	.	.	.	120	.	.	.	.		.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.			.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																.																																													.	.
Query SS confidence																.																																													.	.
Query Sequence		D	G	M	K	D	I	T	V	D	R	L	A	P	R	.	Q	R	L	L	A	A	L	D	E	V	I	S	E	K	L	N	P	A	H	H	I	D	A	V	E	S	K	L	F	G	I	G	A	E	S	Y	T	V	G	S	N	E	F	Y	.	.	M	G	Y	A	T	S	R	Q	T	A	L	C	L	D	A	G	H	F	H
Query Conservation																.																																													.	.
Alig confidence																.											.											.	.																						.	.
Template Conservation																											.											.	.
Template Sequence		D	G	W	D	Y	P	F	Q	V	S	H	K	N	L	W	K	L	A	V	D	G	X	R	D	L	.	A	G	A	N	P	D	V	K	F	A	.	.	I	E	Y	K	P	R	E	P	R	V	K	X	T	W	D	S	A	A	R	T	L	L	G	I	E	D	I	G	L	D	N	V	G	V	L	L	D	F	G	H	A	L
Template Known Secondary structure					S	S	T	T	S	S																	.			T		T	T	S				.	.					S		S	S	S	S			S	S		S												T		T	T
Template Predicted Secondary structure																											.											.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.				300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																					.																	.	.	.
Query SS confidence																					.																	.	.	.
Query Sequence		P	T	E	V	I	S	D	K	I	S	A	A	M	L	Y	V	P	Q	L	.	L	L	H	V	S	R	P	V	R	W	D	S	D	H	V	V	.	.	.	L	L	D	D	E	T	Q	A	I	A	S	E	I	V	R	H	D	L	F	D	R	V	H	I	G	L	D	F	F	D	A	S	I	N	R	I	A	A	W	V	I
Query Conservation																					.																	.	.	.
Alig confidence																					.																	.	.	.																		.	.
Template Conservation																																																										.	.
Template Sequence		Y	G	G	E	S	P	A	D	S	A	Q	L	I	I	D	R	G	R	L	F	G	X	D	V	N	D	N	L	R	G	W	D	D	D	L	V	V	G	T	V	H	X	T	E	I	F	E	F	F	Y	V	L	K	I	N	N	.	.	W	Q	G	V	W	Q	L	D	Q	F	P	F	R	E	N	H	V	E	A	A	Q	L
Template Known Secondary structure			T	T													T	T							B		B			S	S	S				B		T	T	S	S															T	T	.	.												T	T	S
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	R	N	M	K	K	A	L	L	R	A	L	L	E	P	T	A	E	L	R	K	L	E	A	A	G	D	Y	T	A	R	L	A	L	L	E	E	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	R	F	L	K	H	I	Y	R	A	L	D	K	L	D	I	P	A	L	Q	A	A	Q	E	A	Q	N	P	L	Q	A	Q	R	I	V	Q	D	A
Template Known Secondary structure																S												T
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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