Job Description P32170 Confidence 97.71% Date Thu Jan 5 11:49:48 GMT 2012 Rank 28 Aligned Residues 239 % Identity 11% Template c2zdsB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of sco6571 from streptomyces coelicolor2 a3(2) Resolution 2.30 Å

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		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.													.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																																	.						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	S	D	T	P	V	S	R	D	Q	I	K	P	E	H	F	K	N	W	V	E	W	A	K	A	N	Q	L	G	L	D	.	F	N	P	S	C	.	.	.	.	.	.	.	.	.	.	.	.	F	S	H	P	L	S	A	D	G	F	T	L	S	H	A	D	D	S	I	R	Q	F	W	I	D	H	C	K	A	S	R
Query Conservation																																	.						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	D	H	F	E	V	D	K	A	L	A	D	P	S	Y	V	D	S	R	H	Q	L	L	D	K	Y	G	L	K	C	W	A	I	S	N	H	L	V	G	Q	A	V	C	D	A	I	I	D	E	R	H	E	A	I	L	P	A	R	I	W	G	D	G	D	A	E	G	V	R	Q	R	A	A	A	E	I	K	D	T	A
Template Known Secondary structure		T	T	T										T	T												T	T		B		S														S	S		S							S						T	T
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.							.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.									.
Query SS confidence																													.	.	.	.	.	.									.
Query Sequence		R	V	S	A	Y	F	G	E	Q	L	G	T	P	S	V	M	N	I	W	I	P	D	G	M	K	D	I	.	.	.	.	.	.	T	V	D	R	L	A	P	R	.	Q	R	L	L	A	A	L	D	E	V	I	S	E	K	L	N	P	A	H	H	I	D	A	V	E	S	K	L	F	G	I	G	A	E	S	Y	T	V
Query Conservation																													.	.	.	.	.	.									.
Alig confidence				.	.	.	.																						.	.	.	.	.	.									.												.														.	.	.
Template Conservation				.	.	.	.																																																.														.	.	.
Template Sequence		R	A	.	.	.	.	A	A	R	L	G	V	D	T	V	I	G	F	T	G	S	A	I	W	H	L	V	A	X	F	P	P	A	P	E	S	X	I	E	R	G	Y	Q	D	F	A	D	R	W	N	P	I	L	.	D	V	F	D	A	E	G	V	R	F	A	H	E	.	.	.	V	H	P	S	E	I	A	Y	D	Y
Template Known Secondary structure				.	.	.	.					T											S	S	G	G	G	T	T			S																							.							T							.	.	.			T	T	S	S			S
Template Predicted Secondary structure				.	.	.	.																																																.														.	.	.
Template SS confidence
		117	.					.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.				.	180	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																														.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	S	N	E	F	Y	M	G	Y	A	T	S	R	Q	T	A	L	C	L	D	A	G	H	F	H	P	T	E	V	I	S	D	K	I	S	A	A	M	L	Y	V	P	Q	L	.	L	L	H	V	S	R	P	V	R	W	D	S	D	H	V	V	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																														.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.																					.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.
Template Sequence		W	T	T	H	R	A	L	E	A	V	G	H	R	P	A	F	G	L	N	F	D	P	S	.	H	F	V	W	Q	D	L	D	P	V	G	F	L	W	D	F	R	D	R	I	Y	H	V	D	C	K	E	A	R	K	R	L	D	G	R	N	G	R	L	G	S	H	L	P	W	G	D	P	R	R	G	W	D	F	V	S
Template Known Secondary structure											T	T	T		T	T							T		.						T										T	G	G	G															S	S	S	B	T	T		T	T			T	T		T	T	B	S
Template Predicted Secondary structure																									.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
						302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	D	D	E	T	Q	A	I	A	S	E	I	V	R	H	D	L	F	D	R	V	H	I	G	L	D	F	F	D	A	S	I	N	R	I	A	A	W	V	I	G	T	R	N	M	K	K	A	L
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																			.	.
Template Conservation																								.	.
Template Sequence		A	G	H	G	D	V	P	W	E	D	V	F	R	X	L	R	S	I	D	Y	Q	G	.	.	P	V	S	V	E	W	E	D	A	G	X	D	R	L	Q	G	A	P	E	A	L	T	R	L	K	A	F	D
Template Known Secondary structure		T	T	S	S														T	T			S	.	.									T	T	S															T	T
Template Predicted Secondary structure																								.	.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.			290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions