Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0AAQ2
DateThu Jan 5 11:13:29 GMT 2012
Unique Job IDe48f1a604143478c

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2qgpA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr87.
Confidence and coverage
Confidence: 99.4% Coverage: 58%
67 residues ( 58% of your sequence) have been modelled with 99.4% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MAIIPKNYARLESGYREKALKIYPWVCGRCSREFVYSNLRELTVHHIDHDHTNNPEDGSN
Secondary structure 
SS confidence 
Disorder  ????
??
???????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.....
Sequence  WELLCLYCHDHEHSKYTEADQYGTTVIAGEDAQKDVGEAKYNPFADLKAMMNKKK
Secondary structure 
SS confidence 
Disorder 
????????
???????????????????
?????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2qgp chain A

3D model

Region: 10 - 79
Aligned: 67
Modelled: 70
Confidence: 99.4%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr87.

Phyre2

PDB 2gyk chain B domain 1

3D model

Region: 38 - 75
Aligned: 38
Modelled: 38
Confidence: 95.3%
Identity: 16%
Fold: His-Me finger endonucleases
Superfamily: His-Me finger endonucleases
Family: HNH-motif

Phyre2

PDB 1e7l chain A domain 2

3D model

Region: 13 - 69
Aligned: 54
Modelled: 57
Confidence: 94.5%
Identity: 19%
Fold: His-Me finger endonucleases
Superfamily: His-Me finger endonucleases
Family: Recombination endonuclease VII, N-terminal domain

Phyre2

PDB 2qnf chain B

3D model

Region: 13 - 69
Aligned: 54
Modelled: 57
Confidence: 94.4%
Identity: 19%
PDB header:hydrolase/dna
Chain: B: PDB Molecule:recombination endonuclease vii;
PDBTitle: crystal structure of t4 endonuclease vii h43n mutant in2 complex with heteroduplex dna containing base mismatches

Phyre2

PDB 7cei chain B

3D model

Region: 37 - 73
Aligned: 37
Modelled: 37
Confidence: 88.5%
Identity: 19%
PDB header:immune system
Chain: B: PDB Molecule:protein (colicin e7 immunity protein);
PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein

Phyre2

PDB 2jb0 chain B domain 1

3D model

Region: 37 - 72
Aligned: 35
Modelled: 36
Confidence: 61.7%
Identity: 14%
Fold: His-Me finger endonucleases
Superfamily: His-Me finger endonucleases
Family: HNH-motif

Phyre2

PDB 1u3e chain M

3D model

Region: 34 - 67
Aligned: 32
Modelled: 34
Confidence: 59.9%
Identity: 25%
PDB header:dna binding protein/dna
Chain: M: PDB Molecule:hnh homing endonuclease;
PDBTitle: dna binding and cleavage by the hnh homing endonuclease i-hmui

Phyre2

PDB 1u3e chain M domain 1

3D model

Region: 34 - 64
Aligned: 29
Modelled: 31
Confidence: 54.9%
Identity: 28%
Fold: His-Me finger endonucleases
Superfamily: His-Me finger endonucleases
Family: Intron-encoded homing endonucleases

Phyre2

PDB 3m7k chain A

3D model

Region: 27 - 80
Aligned: 54
Modelled: 54
Confidence: 51.6%
Identity: 17%
PDB header:hydrolase/dna
Chain: A: PDB Molecule:restriction endonuclease paci;
PDBTitle: crystal structure of paci-dna enzyme product complex

Phyre2

PDB 1rik chain A

3D model

Region: 23 - 38
Aligned: 16
Modelled: 16
Confidence: 51.5%
Identity: 31%
PDB header:de novo protein
Chain: A: PDB Molecule:e6apc1 peptide;
PDBTitle: e6-binding zinc finger (e6apc1)

Phyre2

PDB 1vd4 chain A

3D model

Region: 22 - 72
Aligned: 38
Modelled: 51
Confidence: 51.0%
Identity: 24%
Fold: Rubredoxin-like
Superfamily: Zinc beta-ribbon
Family: Transcriptional factor domain

Phyre2

PDB 2yt9 chain A domain 1

3D model

Region: 24 - 38
Aligned: 15
Modelled: 15
Confidence: 45.3%
Identity: 27%
Fold: beta-beta-alpha zinc fingers
Superfamily: beta-beta-alpha zinc fingers
Family: Classic zinc finger, C2H2

Phyre2

PDB 1va3 chain A

3D model

Region: 24 - 37
Aligned: 14
Modelled: 14
Confidence: 44.2%
Identity: 29%
PDB header:transcription
Chain: A: PDB Molecule:transcription factor sp1;
PDBTitle: solution structure of transcription factor sp1 dna binding2 domain (zinc finger 3)

Phyre2

PDB 1sp1 chain A

3D model

Region: 24 - 37
Aligned: 14
Modelled: 14
Confidence: 44.2%
Identity: 29%
PDB header:zinc finger
Chain: A: PDB Molecule:sp1f3;
PDBTitle: nmr structure of a zinc finger domain from transcription2 factor sp1f3, minimized average structure

Phyre2

PDB 1sp1 chain A

3D model

Region: 24 - 37
Aligned: 14
Modelled: 14
Confidence: 44.2%
Identity: 29%
Fold: beta-beta-alpha zinc fingers
Superfamily: beta-beta-alpha zinc fingers
Family: Classic zinc finger, C2H2

Phyre2

PDB 1x6e chain A domain 2

3D model

Region: 24 - 45
Aligned: 20
Modelled: 22
Confidence: 43.9%
Identity: 35%
Fold: beta-beta-alpha zinc fingers
Superfamily: beta-beta-alpha zinc fingers
Family: Classic zinc finger, C2H2

Phyre2

PDB 2adr chain A domain 1

3D model

Region: 24 - 38
Aligned: 15
Modelled: 15
Confidence: 43.6%
Identity: 33%
Fold: beta-beta-alpha zinc fingers
Superfamily: beta-beta-alpha zinc fingers
Family: Classic zinc finger, C2H2

Phyre2

PDB 2epr chain A domain 1

3D model

Region: 24 - 48
Aligned: 23
Modelled: 25
Confidence: 43.4%
Identity: 22%
Fold: beta-beta-alpha zinc fingers
Superfamily: beta-beta-alpha zinc fingers
Family: Classic zinc finger, C2H2

Phyre2

PDB 1ard chain A

3D model

Region: 24 - 38
Aligned: 15
Modelled: 15
Confidence: 42.2%
Identity: 33%
PDB header:transcription regulation
Chain: A: PDB Molecule:yeast transcription factor adr1;
PDBTitle: structures of dna-binding mutant zinc finger domains:2 implications for dna binding

Phyre2

PDB 1are chain A

3D model

Region: 24 - 38
Aligned: 15
Modelled: 15
Confidence: 42.0%
Identity: 33%
PDB header:transcription regulation
Chain: A: PDB Molecule:yeast transcription factor adr1;
PDBTitle: structures of dna-binding mutant zinc finger domains:2 implications for dna binding

Phyre2
1
c2qgpA_
2
d2gykb1
3
d1e7la2
4
c2qnfB_
5
c7ceiB_
6
d2jb0b1
7
c1u3eM_
8
d1u3em1
9
c3m7kA_
10
c1rikA_
11
d1vd4a_
12
d2yt9a1
13
c1va3A_
14
c1sp1A_
15
d1sp1a_
16
d1x6ea2
17
d2adra1
18
d2epra1
19
c1ardA_
20
c1areA_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2qgpA_
99.4 16 PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr87.
2d2gykb1
95.3 16 Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
3d1e7la2
94.5 19 Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:Recombination endonuclease VII, N-terminal domain
4c2qnfB_
94.4 19 PDB header:hydrolase/dna
Chain: B: PDB Molecule:recombination endonuclease vii;
PDBTitle: crystal structure of t4 endonuclease vii h43n mutant in2 complex with heteroduplex dna containing base mismatches
5c7ceiB_
88.5 19 PDB header:immune system
Chain: B: PDB Molecule:protein (colicin e7 immunity protein);
PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein
6d2jb0b1
61.7 14 Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
7c1u3eM_
59.9 25 PDB header:dna binding protein/dna
Chain: M: PDB Molecule:hnh homing endonuclease;
PDBTitle: dna binding and cleavage by the hnh homing endonuclease i-hmui
8d1u3em1
54.9 28 Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:Intron-encoded homing endonucleases
9c3m7kA_
51.6 17 PDB header:hydrolase/dna
Chain: A: PDB Molecule:restriction endonuclease paci;
PDBTitle: crystal structure of paci-dna enzyme product complex
10c1rikA_
51.5 31 PDB header:de novo protein
Chain: A: PDB Molecule:e6apc1 peptide;
PDBTitle: e6-binding zinc finger (e6apc1)
11d1vd4a_
51.0 24 Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
12d2yt9a1
45.3 27 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
13c1va3A_
44.2 29 PDB header:transcription
Chain: A: PDB Molecule:transcription factor sp1;
PDBTitle: solution structure of transcription factor sp1 dna binding2 domain (zinc finger 3)
14c1sp1A_
44.2 29 PDB header:zinc finger
Chain: A: PDB Molecule:sp1f3;
PDBTitle: nmr structure of a zinc finger domain from transcription2 factor sp1f3, minimized average structure
15d1sp1a_
44.2 29 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
16d1x6ea2
43.9 35 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
17d2adra1
43.6 33 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
18d2epra1
43.4 22 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
19c1ardA_
42.2 33 PDB header:transcription regulation
Chain: A: PDB Molecule:yeast transcription factor adr1;
PDBTitle: structures of dna-binding mutant zinc finger domains:2 implications for dna binding
20c1areA_
42.0 33 PDB header:transcription regulation
Chain: A: PDB Molecule:yeast transcription factor adr1;
PDBTitle: structures of dna-binding mutant zinc finger domains:2 implications for dna binding
21d2cota1
not modelled 41.9 30 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
22d1llmc2
not modelled 41.9 40 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
23d2cota2
not modelled 40.3 27 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
24d1p7aa_
not modelled 40.0 40 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
25c2kvfA_
not modelled 39.6 22 PDB header:transcription
Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32;
PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein
26c1rimA_
not modelled 37.2 31 PDB header:de novo protein
Chain: A: PDB Molecule:e6apc2 peptide;
PDBTitle: e6-binding zinc finger (e6apc2)
27c1meyG_
not modelled 36.9 33 PDB header:transferase/dna
Chain: G: PDB Molecule:consensus zinc finger;
PDBTitle: crystal structure of a designed zinc finger protein bound2 to dna
28c2ytbA_
not modelled 36.5 40 PDB header:metal binding protein
Chain: A: PDB Molecule:zinc finger protein 32;
PDBTitle: solution structure of c2h2 type zinc finger domain 5 in2 zinc finger protein 32
29c1xf7A_
not modelled 34.9 40 PDB header:transcription
Chain: A: PDB Molecule:wilms' tumor protein;
PDBTitle: high resolution nmr structure of the wilms' tumor2 suppressor protein (wt1) finger 3
30d1xf7a_
not modelled 34.9 40 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
31d1a1ia2
not modelled 34.6 40 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
32d1a1ia3
not modelled 34.4 40 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
33c2k5cA_
not modelled 34.3 16 PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein pf0385;
PDBTitle: nmr structure for pf0385
34d1paaa_
not modelled 33.6 33 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
35d1u85a1
not modelled 31.1 33 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
36d2ct1a2
not modelled 29.9 33 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
37c2ysaA_
not modelled 29.6 26 PDB header:metal binding protein
Chain: A: PDB Molecule:retinoblastoma-binding protein 6;
PDBTitle: solution structure of the zinc finger cchc domain from the2 human retinoblastoma-binding protein 6 (retinoblastoma-3 binding q protein 1, rbq-1)
38d2adra2
not modelled 28.3 32 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
39d1srka_
not modelled 28.1 38 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
40d1x6ea1
not modelled 28.0 31 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
41c2ytaA_
not modelled 27.8 31 PDB header:metal binding protein
Chain: A: PDB Molecule:zinc finger protein 32;
PDBTitle: solution structure of c2h2 type zinc finger domain 3 in2 zinc finger protein 32
42c1arfA_
not modelled 27.7 33 PDB header:transcription regulation
Chain: A: PDB Molecule:yeast transcription factor adr1;
PDBTitle: structures of dna-binding mutant zinc finger domains:2 implications for dna binding
43d2epqa1
not modelled 27.7 24 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
44c2elsA_
not modelled 26.9 23 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 2nd c2h2 zinc finger of human2 zinc finger protein 406
45c2em0A_
not modelled 26.5 32 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 224;
PDBTitle: solution structure of the 18th zf-c2h2 domain from human2 zinc finger protein 224
46c2eoxA_
not modelled 26.3 30 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 473;
PDBTitle: solution structure of the c2h2 type zinc finger (region 315-2 345) of human zinc finger protein 473
47c2eoqA_
not modelled 26.2 30 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 224;
PDBTitle: solution structure of the c2h2 type zinc finger (region 283-2 315) of human zinc finger protein 224
48c2en3A_
not modelled 26.1 35 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 95 homolog;
PDBTitle: solution structure of the c2h2 type zinc finger (region 796-2 828) of human zinc finger protein 95 homolog
49c2yu5A_
not modelled 25.6 40 PDB header:rna binding protein
Chain: A: PDB Molecule:zinc finger protein 473;
PDBTitle: solution structure of the zf-c2h2 domain (669-699aa) in2 zinc finger protein 473
50c3znfA_
not modelled 25.3 33 PDB header:zinc finger dna binding domain
Chain: A: PDB Molecule:zinc finger;
PDBTitle: high-resolution three-dimensional structure of a single2 zinc finger from a human enhancer binding protein in3 solution
51c4znfA_
not modelled 25.3 33 PDB header:zinc finger dna binding domain
Chain: A: PDB Molecule:zinc finger;
PDBTitle: high-resolution three-dimensional structure of a single2 zinc finger from a human enhancer binding protein in3 solution
52d4znfa_
not modelled 25.3 33 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
53c2x5rA_
not modelled 25.2 20 PDB header:viral protein
Chain: A: PDB Molecule:hypothetical protein orf126;
PDBTitle: crystal structure of the hypothetical protein orf126 from2 pyrobaculum spherical virus
54c2epwA_
not modelled 25.0 30 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 268;
PDBTitle: solution structure of the 24th c2h2 type zinc finger domain2 of zinc finger protein 268
55c2eltA_
not modelled 24.7 31 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 3rd c2h2 zinc finger of human2 zinc finger protein 406
56c2d9hA_
not modelled 24.5 16 PDB header:dna binding protein
Chain: A: PDB Molecule:zinc finger protein 692;
PDBTitle: solution structure of the forth and fifth zf-c2h2 domains2 of zinc finger protein 692
57c1zu1A_
not modelled 24.0 20 PDB header:rna binding protein
Chain: A: PDB Molecule:rna binding protein zfa;
PDBTitle: solution structure of the n-terminal zinc fingers of the2 xenopus laevis double stranded rna binding protein zfa
58d1x6ha2
not modelled 23.9 27 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
59c2yteA_
not modelled 23.1 31 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 473;
PDBTitle: solution structure of the c2h2 type zinc finger (region 484-2 512) of human zinc finger protein 473
60c2jrrA_
not modelled 23.1 30 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of q5lls5 from silicibacter2 pomeroyi. northeast structural genomics consortium target3 sir90
61c2elqA_
not modelled 23.0 23 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 14th c2h2 zinc finger of human2 zinc finger protein 406
62c2epcA_
not modelled 22.9 40 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 32;
PDBTitle: solution structure of zinc finger domain 7 in zinc finger2 protein 32
63d2epsa1
not modelled 22.9 31 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
64c2eohA_
not modelled 22.2 33 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 28 homolog;
PDBTitle: solution structure of the c2h2 type zinc finger (region 780-2 812) of human zinc finger protein 28 homolog
65d1ubdc2
not modelled 21.6 43 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
66c1dvbA_
not modelled 21.6 38 PDB header:electron transport
Chain: A: PDB Molecule:rubrerythrin;
PDBTitle: rubrerythrin
67c2eq4A_
not modelled 21.5 25 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 224;
PDBTitle: solution structure of the 11th c2h2 type zinc finger domain2 of zinc finger protein 224
68c2el5A_
not modelled 21.0 31 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 268;
PDBTitle: solution structure of the 18th zf-c2h2 domain from human2 zinc finger protein 268
69c2emzA_
not modelled 20.9 31 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 95 homolog;
PDBTitle: solution structure of the c2h2 type zinc finger (region 628-2 660) of human zinc finger protein 95 homolog
70c2elzA_
not modelled 20.7 27 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 224;
PDBTitle: solution structure of the 17th zf-c2h2 domain from human2 zinc finger protein 224
71c2epzA_
not modelled 20.6 31 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 28 homolog;
PDBTitle: solution structure of the 4th c2h2 type zinc finger domain2 of zinc finger protein 28 homolog
72d2dmda2
not modelled 19.8 27 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
73d1ibia2
not modelled 19.7 20 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
74d7znfa_
not modelled 19.7 25 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
75c7znfA_
not modelled 19.7 25 PDB header:zinc finger dna binding domain
Chain: A: PDB Molecule:zinc finger;
PDBTitle: alternating zinc fingers in the human male associated2 protein zfy: 2d nmr structure of an even finger and3 implications for "jumping-linker" dna recognition
76c2yttA_
not modelled 18.9 31 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 473;
PDBTitle: solution structure of the c2h2 type zinc finger (region 204-2 236) of human zinc finger protein 473
77d1njqa_
not modelled 18.7 45 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Plant C2H2 finger (QALGGH zinc finger)
78c2dmiA_
not modelled 18.7 37 PDB header:transcription
Chain: A: PDB Molecule:teashirt homolog 3;
PDBTitle: solution structure of the first and the second zf-c2h2 like2 domains of human teashirt homolog 3
79c2ythA_
not modelled 18.6 35 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 224;
PDBTitle: solution structure of the c2h2 type zinc finger (region 479-2 511) of human zinc finger protein 224
80c1klrA_
not modelled 18.4 20 PDB header:transcription
Chain: A: PDB Molecule:zinc finger y-chromosomal protein;
PDBTitle: nmr structure of the zfy-6t[y10f] zinc finger
81d1klra_
not modelled 18.4 20 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
82d2dmda3
not modelled 18.3 40 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
83c2h3eB_
not modelled 18.0 27 PDB header:transferase
Chain: B: PDB Molecule:aspartate carbamoyltransferase regulatory chain;
PDBTitle: structure of wild-type e. coli aspartate transcarbamoylase in the2 presence of n-phosphonacetyl-l-isoasparagine at 2.3a resolution
84c3jyw9_
not modelled 18.0 13 PDB header:ribosome
Chain: 9: PDB Molecule:60s ribosomal protein l43;
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
85d1jj2y_
not modelled 17.9 13 Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
86c1yshD_
not modelled 17.7 13 PDB header:structural protein/rna
Chain: D: PDB Molecule:ribosomal protein l37a;
PDBTitle: localization and dynamic behavior of ribosomal protein l30e
87c2zkrz_
not modelled 17.6 13 PDB header:ribosomal protein/rna
Chain: Z: PDB Molecule:e site t-rna;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
88d1vqoz1
not modelled 17.6 13 Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
89c2emlA_
not modelled 16.8 40 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 28 homolog;
PDBTitle: solution structure of the c2h2 type zinc finger (region 752-2 784) of human zinc finger protein 28 homolog
90c3goxB_
not modelled 16.7 18 PDB header:hydrolase/dna
Chain: B: PDB Molecule:restriction endonuclease hpy99i;
PDBTitle: crystal structure of the beta-beta-alpha-me type ii restriction2 endonuclease hpy99i in the absence of edta
91c2jvmA_
not modelled 16.5 25 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of rhodobacter sphaeroides protein2 rhos4_26430. northeast structural genomics consortium3 target rhr95
92d1ffkw_
not modelled 16.5 13 Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
93c2epsA_
not modelled 15.9 17 PDB header:transcription
Chain: A: PDB Molecule:poz-, at hook-, and zinc finger-containing
PDBTitle: solution structure of the 4th zinc finger domain of zinc2 finger protein 278
94c2drpD_
not modelled 15.9 21 PDB header:transcription/dna
Chain: D: PDB Molecule:protein (tramtrack dna-binding domain);
PDBTitle: the crystal structure of a two zinc-finger peptide reveals2 an extension to the rules for zinc-finger/dna recognition
95c2en2A_
not modelled 15.8 38 PDB header:transcription
Chain: A: PDB Molecule:b-cell lymphoma 6 protein;
PDBTitle: solution structure of the c2h2 type zinc finger (region 598-2 626) of human b-cell lymphoma 6 protein
96c2em5A_
not modelled 15.7 31 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 95 homolog;
PDBTitle: solution structure of the c2h2 type zinc finger (region 768-2 800) of human zinc finger protein 95 homolog
97c1xrzA_
not modelled 15.4 38 PDB header:transcription
Chain: A: PDB Molecule:zinc finger y-chromosomal protein;
PDBTitle: nmr structure of a zinc finger with cyclohexanylalanine2 substituted for the central aromatic residue
98c2eomA_
not modelled 15.3 23 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 95 homolog;
PDBTitle: solution structure of the c2h2 type zinc finger (region 341-2 373) of human zinc finger protein 95 homolog
99c2elxA_
not modelled 15.1 40 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 8th c2h2 zinc finger of mouse2 zinc finger protein 406

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0