Job Description P15993 Confidence 100.00% Date Thu Jan 5 11:35:00 GMT 2012 Rank 2 Aligned Residues 404 % Identity 17% Template c3lrcC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) Resolution 4.00 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	G	L	K	N	R	H	I	Q	L	I	A	L	G	G	A	I	G	T	G	L	F	L	G	S	A	S	V	I	Q	S	A	G	P	G	I	I	L	G	Y	A	I	A	G	F	I	A	F	L	I	M	R	Q	L	G	E	M	V	V	E	E	P	V	A	G	S	F	S	H	F	A	Y	K	Y	W	G	S	F	A
Query Conservation
Alig confidence																																					.
Template Conservation																																					.
Template Sequence		A	H	K	V	G	L	I	P	V	T	L	M	V	S	G	N	I	M	G	S	G	V	F	L	L	P	A	N	L	A	S	T	G	G	I	.	A	I	Y	G	W	L	V	T	I	I	G	A	L	G	L	S	M	V	Y	A	K	M	S	F	L	D	P	S	P	G	G	S	Y	A	Y	A	R	R	C	F	G	P	F	L
Template Known Secondary structure			S	S													T	T	S	S	S	S	T	T	T					T	T	S	S				.		S																						T	T				S	S		T	T	T	G	G	G	G	T	T
Template Predicted Secondary structure																																					.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.					.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.
Query SS confidence																																		.	.	.	.
Query Sequence		G	F	A	S	G	W	N	Y	W	V	L	Y	V	L	V	A	M	A	E	L	T	A	V	G	K	Y	I	Q	F	W	Y	P	.	.	.	.	E	I	P	T	W	V	S	A	A	V	F	F	V	V	I	N	A	I	N	L	T	N	V	K	V	F	G	E	M	E	F	W	F	A	I	I	K	V	I	A	V	V	A	M
Query Conservation																																		.	.	.	.
Alig confidence																																		.	.	.	.
Template Conservation
Template Sequence		G	Y	Q	T	N	V	L	Y	W	L	A	C	W	I	G	N	I	A	M	V	V	I	G	V	G	Y	L	S	Y	F	F	P	I	L	K	D	P	L	V	L	T	I	T	C	V	V	V	L	W	I	F	V	L	L	N	I	V	G	P	K	M	I	T	R	V	Q	A	V	A	T	V	L	A	L	I	P	I	V	G	I
Template Known Secondary structure											T	T	T	T											T	G	G	G	S	S	S	S					S	S	S																			S		S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	F	G	G	W	L	L	F	S	G	N	G	G	P	Q	A	T	V	S	N	L	W	D	Q	G	G	F	L	P	H	G	F	T	G	L	V	M	M	M	A	I	I	M	F	S	F	G	G	L	E	L	V	G	I	T	A	A	E	A	D	N	P	E	Q	S	I	P	K	A	T	N	Q	V	I	Y	R	I	L	I
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.
Template Sequence		A	V	F	G	W	.	.	.	.	.	.	.	.	F	W	F	R	G	E	T	Y	M	A	A	W	N	V	S	G	L	G	T	F	G	A	I	Q	S	T	L	N	V	T	L	W	S	F	I	G	V	E	S	A	S	V	A	A	G	V	V	K	N	P	K	R	N	V	P	I	A	T	I	G	G	V	L	I	A	A	V
Template Known Secondary structure							.	.	.	.	.	.	.	.		S			S	S							S		S	S	S						T								S	T	T		T	T	G	G	G					G	G	G	S	S	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.
Template SS confidence
		166	.	.	.	170									.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Y	I	G	S	L	A	V	L	L	S	L	M	P	W	T	R	V	T	A	D	T	S	P	F	V	L	I	F	H	E	L	G	D	T	F	V	A	N	A	L	N	I	V	V	L	T	A	A	L	S	V	Y	N	S	C	V	Y	C	N	S	R	M	L	F	G	L	A	Q	Q	G	N	A	P	K	A	L	A	S	V
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	Y	V	L	S	T	T	A	I	M	G	M	I	P	N	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	I	V	S	F	C	A	A	A	G	C	L	G	S	L	G	G	W	T	L	L	A	G	Q	T	A	K	A	A	A	D	D	G	L	F	P	P	I	F	A	R	V
Template Known Secondary structure							T	T				S						T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T																T	T	S	S	T	T	T	S	S		S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.																					.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		D	K	R	G	V	P	V	N	T	I	L	V	S	A	L	V	T	A	L	C	V	L	I	N	Y	L	A	P	E	S	.	A	F	G	L	L	M	A	L	V	V	S	A	L	V	I	N	W	A	M	I	S	L	A	H	M	K	F	R	R	A	K	Q	E	Q	G	V	V	T	R	F	P	A	L	L	Y	P	L	G	N
Query Conservation																																.
Alig confidence																																.																																							.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.	.	.
Template Sequence		N	K	A	G	T	P	V	A	G	L	I	I	V	G	I	L	M	T	I	F	Q	L	S	S	I	S	P	N	A	T	K	E	F	G	L	V	S	S	V	S	V	I	F	T	L	V	P	Y	L	Y	T	C	A	A	L	L	L	L	G	H	G	H	F	G	K	A	R	P	A	.	.	.	.	.	.	.	.	.	.	Y
Template Known Secondary structure			S	S	S	S																	T	T	S	S	S		S	S	S	S	S			S	S	T	T						T	T													T		T	T		S	S	S					.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.											.
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	I	C	L	L	F	M	A	A	V	L	V	I	M	L	M	T	P	G	M	A	I	S	V	Y	L	I	P	V	W	L	I	V	L	G	I	G	Y	L	F	K	E	K	T	A	K	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	V	T	T	I	A	F	L	Y	C	I	W	A	V	V	G	S	G	A	K	E	V	M	W	S	F	V	T	L	M	V	I	T	A	M	Y	A	L	N	Y	N	R	L	H	K	N	P
Template Known Secondary structure																		S	S																		T	T	T	S						S	S
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.