Job Description P15993 Confidence 100.00% Date Thu Jan 5 11:35:00 GMT 2012 Rank 1 Aligned Residues 421 % Identity 16% Template c3giaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Resolution 2.32 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		K	R	G	L	K	N	R	H	I	Q	L	I	A	L	G	G	A	I	G	T	G	L	F	L	G	S	A	S	V	I	Q	S	A	G	P	G	I	I	L	G	Y	A	I	A	G	F	I	A	F	L	I	M	R	Q	L	G	E	M	V	V	E	E	P	V	A	G	S	F	S	H	F	A	Y	K	Y	W	G	S	.	F
Query Conservation																																																																																.
Alig confidence																																																																																.
Template Conservation
Template Sequence		N	K	K	L	S	L	W	E	A	V	S	M	A	V	G	V	M	I	G	A	S	I	F	S	I	F	G	V	G	A	K	I	A	G	R	N	L	P	E	T	F	I	L	S	G	I	Y	A	L	L	V	A	Y	S	Y	T	K	L	G	A	K	I	V	S	N	A	G	P	I	A	F	I	H	K	A	I	G	D	N	I
Template Known Secondary structure					B																		T	T	T	S									G	G	G																								T	T				T	T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.
Query SS confidence																																							.	.	.	.
Query Sequence		A	G	F	A	S	G	W	N	Y	W	V	L	Y	V	L	V	A	M	A	E	L	T	A	V	G	K	Y	I	Q	F	W	Y	P	E	I	P	T	.	.	.	.	W	V	S	A	A	V	F	F	V	V	I	N	A	I	N	L	T	N	V	K	V	F	G	E	M	E	F	W	F	A	I	I	K	V	I	A	V	V	A
Query Conservation																																							.	.	.	.
Alig confidence																																							.	.	.	.
Template Conservation
Template Sequence		I	T	G	A	L	S	I	L	L	W	M	S	Y	V	I	S	I	A	L	F	A	K	G	F	A	G	Y	F	L	P	L	I	N	A	P	I	N	T	F	N	I	A	I	T	E	I	G	I	V	A	F	F	T	A	L	N	F	F	G	S	K	A	V	G	R	A	E	F	F	I	V	L	V	K	L	L	I	L	G	L
Template Known Secondary structure																																	T	T																										T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	I	F	G	G	W	L	L	F	S	G	N	G	G	P	Q	A	T	V	S	N	L	W	D	Q	G	G	F	L	P	H	G	F	T	G	L	V	M	M	M	A	I	I	M	F	S	F	G	G	L	E	L	V	G	I	T	A	A	E	A	D	N	P	E	Q	S	I	P	K	A	T	N	Q	V	I	Y	R	I	L
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	I	F	A	G	L	I	.	.	.	.	.	.	.	.	.	.	.	T	I	H	P	S	Y	V	I	P	D	L	A	P	S	A	V	S	G	M	I	F	A	S	A	I	F	F	L	S	Y	M	G	F	G	V	I	T	N	A	S	E	H	I	E	N	P	K	K	N	V	P	R	A	I	F	I	S	I	L	I	V	M
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.	.				G	G	G	T	S				S														G	G	G	G	G	T							T	T	G	G	G	B	S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.												.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		I	F	Y	I	G	S	L	A	V	L	L	S	L	M	P	W	T	R	V	.	T	A	D	T	S	P	F	V	L	I	F	H	E	L	G	D	T	F	V	A	N	A	L	N	I	V	V	L	T	A	A	L	S	V	Y	N	S	C	V	Y	C	N	S	R	M	L	F	G	L	A	Q	Q	G	N	A	P	K	A	L	A
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		F	V	Y	V	G	V	A	I	S	A	I	G	N	L	P	I	D	E	L	I	K	A	S	E	N	A	L	A	V	A	A	K	P	F	L	G	N	L	G	F	L	L	I	S	I	G	A	L	F	S	I	S	S	A	M	N	A	T	I	Y	G	G	A	N	V	A	Y	S	L	A	K	D	G	E	L	P	E	F	F	E
Template Known Secondary structure													T	T	S								T	G	G	G																																			T	T	T											S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	D	K	R	G	V	P	V	N	T	I	L	V	S	A	L	V	T	A	L	C	V	L	I	N	Y	L	A	P	E	S	A	F	G	L	L	M	A	L	V	V	S	A	L	V	I	N	W	A	M	I	S	L	A	H	M	K	F	R	R	A	K	Q	E	Q	G	V	V	T	R	F	P	A	L	L	Y	P	L	G
Query Conservation
Alig confidence																										.	.	.	.	.	.	.																																				.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.																																				.	.	.	.	.
Template Sequence		R	K	V	W	F	K	S	T	E	G	L	Y	I	T	S	A	L	G	V	L	F	A	L	L	.	.	.	.	.	.	.	F	N	M	E	G	V	A	S	I	T	S	A	V	F	M	V	I	Y	L	F	V	I	L	S	H	Y	I	L	I	D	E	V	G	G	R	.	.	.	.	.	K	E	I	V	I	F	S	F	I
Template Known Secondary structure		T	T	S			S		T																	.	.	.	.	.	.	.	S																											T								.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.																																				.	.	.	.	.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.								.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.						.	.	.	.	.	.	.	380	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	W	I	C	L	L	F	M	A	A	V	L	V	I	M	L	M	T	P	G	M	A	I	S	V	Y	L	I	P	V	W	L	I	V	L	G	I	G	Y	L	F	K	E	K	T	A	K	A	V	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	L	G	V	F	L	L	L	L	Y	Y	Q	W	I	T	N	R	F	V	F	Y	G	I	I	A	T	F	I	G	V	L	I	F	E	I	I	Y	R	K	V	T	K	R	T	F	S	N	N	M
Template Known Secondary structure																																																	G	G	G
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.