Job Description P15993 Confidence 97.60% Date Thu Jan 5 11:35:00 GMT 2012 Rank 7 Aligned Residues 369 % Identity 9% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.																						.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	R	G	L	K	N	R	H	I	Q	L	I	A	L	G	G	A	I	G	T	G	L	F	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	A	S	V	I	Q	S	A	G	P	G	I	I	L	G	Y	A	I	A	G	F	I	A	F	L	I	M	R	Q	L	G	E	M	V
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	P	E	F	R	T	V	S	W	I	S	X	X	F	A	A	G	X	G	I	G	L	X	F	Y	G	T	T	E	P	L	T	F	Y	R	N	G	V	P	G	H	D	E	H	N	V	G	V	A	X	S	T	T	X	F	H	W	T	L	H	P	W	A	I	Y	A	I	V	G	L	A	I	A	Y	S	T	F	R	V	G
Template Known Secondary structure				S	S																																T			T	T	S		S	S														S																		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		71	.	.	.	.	.	.	.	.	80						.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.
Query SS confidence												.	.	.	.	.
Query Sequence		V	E	E	P	V	A	G	S	F	S	.	.	.	.	.	H	F	A	Y	K	Y	W	G	S	F	A	G	F	A	S	G	W	N	Y	W	V	L	Y	V	L	V	A	M	A	E	L	T	A	V	G	K	Y	I	Q	F	W	Y	P	E	I	P	T	W	V	S	A	A	V	F	F	V	V	I	N	A	I	N	L	T	N
Query Conservation												.	.	.	.	.
Alig confidence												.	.	.	.	.
Template Conservation
Template Sequence		R	K	Q	L	L	S	S	A	F	V	P	L	I	G	E	K	G	A	E	G	W	L	G	K	L	I	D	I	L	A	I	I	A	T	V	F	G	T	A	C	S	L	G	L	G	A	L	Q	I	G	A	G	L	S	A	A	N	I	I	E	S	D	W	T	I	V	G	I	V	S	V	L	T	L	A	F	I	F	S	A
Template Known Secondary structure				S	S	G	G	G	G	G	T	T	T	S		T	T	T			S	S	S	S																															T	T	T	S																			T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.														.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	K	V	F	G	E	M	E	F	W	F	A	I	I	K	V	I	A	V	V	A	M	I	I	F	G	G	W	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	F	S	G	N	G	G	P	Q	A	T	V	S	N	L	W	D	Q	G	G	F	L	P	H	G	F	T	G	L	V	M	M	M	A	I	I	M	F
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	S	G	V	G	K	G	I	Q	Y	L	S	N	A	N	X	V	L	A	A	L	L	A	I	F	V	F	V	V	G	P	T	V	S	I	L	N	L	L	P	G	S	I	G	N	Y	L	S	N	F	F	Q	X	A	G	R	T	A	X	S	A	D	G	T	A	G	E	W	L	G	S	W	T	I	F	Y	W	A	W	W
Template Known Secondary structure		T	T	S			S																								S																									T			T	T	T	T	S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.						.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.
Query Sequence		S	F	G	G	L	E	L	V	G	I	T	A	A	E	A	D	N	P	E	Q	S	I	P	K	A	T	N	Q	V	I	Y	R	I	L	I	F	Y	I	G	S	L	A	V	L	L	S	L	M	P	W	T	R	V	.	.	.	.	.	T	A	D	T	S	P	F	V	L	I	F	H	E	L	G	D	T	F	V	A	N	A
Query Conservation																																																							.	.	.	.	.
Alig confidence																		.	.																																				.	.	.	.	.
Template Conservation																		.	.
Template Sequence		I	S	W	S	P	F	V	G	X	F	L	A	R	I	S	R	.	.	G	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L	H	A	L	P	G	G	Q	I
Template Known Secondary structure			T	T												T	T	.	.	T																																				T						T	T		S										T	S	T	T
Template Predicted Secondary structure																		.	.
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390			.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.				.	.	.	.	360	.	.	.	.
Predicted Secondary structure																																																																						.	.	.
Query SS confidence																																																																						.	.	.
Query Sequence		L	N	I	V	V	L	T	A	A	L	S	V	Y	N	S	C	V	Y	C	N	S	R	M	L	F	G	L	A	Q	Q	G	N	A	P	K	A	L	A	S	V	D	K	R	G	V	P	V	N	T	I	L	V	S	A	L	V	T	A	L	C	V	L	I	N	Y	L	A	P	.	.	.	E	S	A	F	G	L	L	M	A
Query Conservation																																																																						.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.
Template Sequence		X	G	I	I	A	X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	G	.	.	.	.	.	.	.	.	.	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	I	G	L	T	L	L	L	S	G	G	D	N	A	L	S	N	L	Q	N	V	T	I
Template Known Secondary structure																													T	T	T	T	.	.	.	.	.	.	.	.	.		S	S																									G	G	G
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.
Template SS confidence
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.										.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	V	S	A	L	V	I	N	W	A	M	I	S	L	A	H	M	K	F	R	R	A	K	Q	E	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	A	T	P	F	L	F	V	V	I	G	L	X	F	A	L	V	K	D	L	S	N	D	V	I	Y
Template Known Secondary structure																								T
Template Predicted Secondary structure
Template SS confidence
		524	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550