Return to main results Retrieve Phyre Job Id

Job DescriptionP31064
Confidence3.51%DateThu Jan 5 11:47:02 GMT 2012
Rank29Aligned Residues119
% Identity13%Templatec1oy8A_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump
Resolution3.63 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   186...190.........200.........210.........220.........230.... .....240.........250.........
Predicted Secondary structure 








......






Query SS confidence 
















































. . . . . .
























Query Sequence  LTQKPDQARRRFRLGMLVFFGMLGWALLTAMNQPKLGLAMLFGVGFGLL. . . . . . IERAQICFTSAFRDMWITGRTHMAK
Query Conservation               
                     
 
 

 
   
  ......







  
 

           
Alig confidence 
















































......
























Template Conservation 
    



  
 
   
    
 
 
  
   
 

 
 



 

  
 

          
     

  
   
 
Template Sequence  SWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLR
Template Known Secondary structure  SSSGGGTGGGSS

B
SSS


TTTTTT
Template Predicted Secondary structure 









Template SS confidence 















































































   894.....900.........910.........920.........930.........940.........950.........960.........970...
 
   260.........270.........280.........290 .........300....
Predicted Secondary structure 









.
Query SS confidence 






























.













Query Sequence  AIIIGMAVSAIGIFSYVQLGVEPKIMWAGPN. AVIGGLLFGFGIVL
Query Conservation    
  
 
  
    
   
         
 . 



 





 
Alig confidence 






























.













Template Conservation 


 





 
  

  
   
      

  
  

  
    
Template Sequence  PILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI
Template Known Secondary structure  STT

SS
ST
Template Predicted Secondary structure 



Template SS confidence 













































   974.....980.........990.........1000.........1010.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions