Job Description P0ABL1 Confidence 98.58% Date Thu Jan 5 11:15:45 GMT 2012 Rank 19 Aligned Residues 155 % Identity 21% Template c3f29A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:eight-heme nitrite reductase; PDBTitle: structure of the thioalkalivibrio nitratireducens2 cytochrome c nitrite reductase in complex with sulfite Resolution 2.00 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.															.	.	.	.	.	.	.	80
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	G	L	L	W	S	L	N	G	I	T	A	T	P	A	A	Q	A	S	D	D	R	Y	E	V	T	Q	Q	R	N	P	D	A	A	C	L	D	C	H	K	P	D	T	E	G	M	H	G	K	H	A	S	V	I	N	P	N	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	P	V	T	C	T	N
Query Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	V	R	G	A	W	T	V	L	T	D	A	D	P	E	S	S	D	Q	R	R	F	L	S	Q	T	A	T	A	A	N	P	V	C	L	N	C	K	T	Q	D	H	I	L	D	W	A	Y	M	G	D	E	H	E	A	A	K	W	S	R	T	S	E	V	V	E	F	A	R	D	L	N	H	P	L	N	C	F	M
Template Known Secondary structure							G	G	G	T				S		T	T			S				S	S	T	T											T	T	T			T	T	T	T	T	B		G	G	G				T	T		S	B		T	T	S							T	T				S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.																																			110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Query Sequence		C	H	G	Q	P	S	P	Q	H	R	E	G	V	K	D	V	M	R	F	N	E	P	M	Y	K	V	G	E	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	S	V	C	M	S	C	H	L	P	E	.	.	.	.	.	.
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template Conservation
Template Sequence		C	H	D	P	H	S	A	G	P	R	V	V	R	D	G	L	I	N	A	V	V	D	R	G	L	G	T	Y	P	H	D	P	V	K	S	E	Q	Q	G	M	T	K	V	T	F	Q	R	G	R	E	D	F	R	A	I	G	L	L	D	T	A	D	S	N	V	M	C	A	Q	C	H	V	E	Y	N	C	N	P	G	Y
Template Known Secondary structure		T	B		T	T	T			B												T	T	T				S	S	T	T								T										T	T										S	S								T	T	T	S	S					S
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
																																	121	.	.	.	.	.	.	.	.	130	.	.	.	.	.																						.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	Q	K	A	F	W	P	H	D	V	H	V	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	C	A	S	C	H	S	L	H	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation
Template Sequence		Q	L	S	D	G	S	R	V	G	M	D	D	R	R	A	N	H	F	F	W	A	N	V	F	D	Y	K	E	A	A	Q	E	I	D	F	F	D	F	R	H	A	T	T	G	A	A	L	P	K	L	Q	H	P	E	A	E	T	F	W	G	S	V	H	E	R	N	G	V	A	C	A	D	C	H	M	P	K	V	Q	L
Template Known Secondary structure			T	T	T						T	T	S	G	G	G	S																	T	T		B					T	T	T																T	T	S					T	T								S		B
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
						146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	P	Q	Q	D	T	M	Q	T	L	S	D	K	G	R	I	K	I	C	V	D	C	H	S	D
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		E	N	G	K	V	Y	T	S	H	S	Q	R	T	P	R	D	M	M	G	Q	A	C	L	N	C	H	A	E
Template Known Secondary structure		S	S	S				B							G	G	G	G					T	T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions