|   |
49 | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | K | P | G | M | T | V | V | D | L | G | A | A | P | G | G | W | S | Q | Y | V | V | T | Q | I | G | G | K | G | R | I | I | A | C | D | L | L | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
M | D | P | I | V | G | V | D | F | L | Q | G | D | F | R | D | E | L | V | M | K | A | L | L | E | R | V | G | D | S |
Query Conservation |   |
|
|
|
|   |   |
|
|
|
|
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|
|
|   |   | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |   |
|
|
|   |
|   |
|
|
|   |   |
|   |   |
|
|   |   |   |   |   |   |
|   |
|   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   | . | . | . | . | . | . | . | . | . |   |   |   |   |   |
Template Sequence |   |
V | K | E | G | D | R | I | I | D | T | G | V | G | S | G | A | M | C | A | V | L | A | R | A | V | G | S | S | G | K | V | F | A | Y | E | K | R | E | E | F | A | K | L | A | E | S | N | L | T | K | W | G | L | I | E | R | V | T | I | K | V | R | D | I | S | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
G | F | D | E | K |
Template Known Secondary structure |   |
|
| T | T |
|  |  |  |  |  |
|
| T | T | S |  |  |  |  |  |  |  |  |  | T | T | T | T |
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| G | G | G |  |  |  |  |
|
|
| G | G | G | . | . | . | . | . | . | . | . | . |
|
| S |
|
|
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
98 | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . |
  |
  |   |
117 | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | |
. | . | . | . | . | . | |
|
|
|
|
|
|
|
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . |
|
|  |  |  |  | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
K | V | Q | V | V | M | S | D | M | A | P | N | M | S | G | T | P | A | V | D | I | P | R | A | M | Y | L | V | E | L | A | L | E | M | C | R | D | V | L | A | P | G | G | S | F | V | V | K | V | F | Q | G | E | G | F | D | E | Y | L | R | E | I | R | S | L | . |
F | T | K | V | K | V | . |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
  |   |
|   |
|
|   |
|   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|   |   |   |
|
|   |
|
|   |
|
|   |
|
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   | . |
|   |   |
|   |   | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |
|   |
|   |   |
|   |
|   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |   |   |   |   |   |
|
|
|
|
|   |
|
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |
|   |   |
Template Sequence |   |
D | V | D | A | L | F | L | D | V | P | D | P | W | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
N | Y | I | D | K | C | W | E | A | L | K | G | G | G | R | F | A | T | V | C | P | T | T | N | Q | V | Q | E | T | L | K | K | L | Q | E | L | P | F | I | R | I | E | V | W | E | S | L | F | R | P | Y |
Template Known Secondary structure |   |
S |  |  |  |  |  |  |
|
| S |
| G | G | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |
|
|
|
|
|
|  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |
|
|
|  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
169 | 170 | . | . | . | . | . | . | . | . | . | 180 | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . |
  |
  |   |
|
188 | . | 190 | . | . | . | . | . | . | . | . | . | 200 | |
|
|
|
. | . | . |
Predicted Secondary structure |   |
. |  |
|
|
|
|
|
|
|
|
|
|  |  | . | . | . | . |  |  |  |
Query SS confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
Query Sequence |   |
. |
R | K | P | D | S | S | R | A | R | S | R | E | V | . |
. |
. |
. |
Y | I | V |
Query Conservation |   |
. |   |
|
|   |
|
|
|   |   |
|   |
|   | . | . | . | . |
|   |
|
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|
|   |   |   |   |
|
|
|
|
|
|
|   |
Template Sequence |   |
K | P | V | P | E | R | L | R | P | V | D | R | M | V | A | H | T | A | Y | M | I |
Template Known Secondary structure |   |
 |
|
| T | T | S |
|  |  |
| S |
|
|
|
|
| S |
|  |  |  |
Template Predicted Secondary structure |   |
 |  |
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
233 | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . |
  |