Job Description P0C0R7 Confidence 100.00% Date Wed Jan 25 15:20:35 GMT 2012 Rank 8 Aligned Residues 197 % Identity 21% Template c3lkzB_ PDB info PDB header:viral protein Chain: B: PDB Molecule:non-structural protein 5; PDBTitle: structural and functional analyses of a conserved hydrophobic pocket2 of flavivirus methyltransferase Resolution 2.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.								.	20	.	.	.	.	.	.	.	.	.	30							.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.													.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.													.	.	.	.	.	.
Query Sequence		G	K	K	R	S	A	S	S	S	R	W	L	Q	E	H	F	.	.	.	.	.	.	.	S	D	K	Y	V	Q	Q	A	Q	K	K	G	.	.	.	.	.	.	L	R	S	R	A	W	F	K	L	D	E	I	Q	Q	S	D	K	L	F	K	P	G	M	T	V	V	D	L	G	A	A	P	G	G	W	S	Q	Y	V
Query Conservation																		.	.	.	.	.	.	.													.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.													.	.	.	.	.	.																		.
Template Conservation																																																												.
Template Sequence		K	E	R	L	N	Q	M	T	K	E	E	F	T	R	Y	R	K	E	A	I	I	E	V	D	R	S	A	A	K	H	A	R	K	E	G	N	V	T	G	G	H	P	V	S	R	G	T	A	K	L	R	W	L	V	E	R	R	F	.	L	E	P	V	G	K	V	I	D	L	G	C	G	R	G	G	W	C	Y	Y	M
Template Known Secondary structure						T	T	S									T	T	T	T																T			S	S				S	S	T											T	T	S	.											T		T	T
Template Predicted Secondary structure																																																												.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		V	T	Q	I	G	G	K	G	R	I	I	A	C	D	L	L	.	.	P	M	D	P	I	V	G	V	D	F	L	Q	G	D	F	R	D	E	L	V	M	K	A	L	L	E	R	V	G	D	S	K	V	Q	V	V	M	S	D	M	A	P	N	M	S	G	T	P	A	V	D	I	P	R	A	M	Y	L	V	E	L	A
Query Conservation																		.	.
Alig confidence							.											.	.																										.																		.															.	.	.	.
Template Conservation							.																																						.																		.															.	.	.	.
Template Sequence		A	T	Q	K	R	.	V	Q	E	V	R	G	Y	T	K	G	G	P	G	H	E	E	P	Q	L	V	Q	S	Y	G	W	N	I	V	T	M	K	S	G	V	D	V	F	.	Y	R	P	S	E	C	C	D	T	L	L	C	D	I	G	E	S	.	S	S	S	A	E	V	E	E	H	R	T	I	R	V	.	.	.	.
Template Known Secondary structure		T	T		T	T	.											S	T	T	S								B	T	T	G	G	G						S			T	T	.	S	S						S										.		S													.	.	.	.
Template Predicted Secondary structure							.																																						.																		.															.	.	.	.
Template SS confidence
		92	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.																			.	.
Query SS confidence													.																			.	.
Query Sequence		L	E	M	C	R	D	V	L	A	P	G	.	G	S	F	V	V	K	V	F	Q	G	E	G	F	D	E	Y	L	R	.	.	E	I	R	S	L	F	T	K	V	K	V	R	K	P	D	S	S	R	A	R	S	R	E	V	Y	I	V	A	T	G	R	K	P
Query Conservation													.																			.	.
Alig confidence													.																			.	.									.																			.
Template Conservation																																										.																			.
Template Sequence		L	E	M	V	E	D	W	L	H	R	G	P	R	E	F	C	V	K	V	L	C	P	Y	M	P	K	V	I	E	K	M	E	L	L	Q	R	R	Y	G	G	.	G	L	V	R	N	P	L	S	R	N	S	T	H	E	M	Y	W	V	.	S	R	A	S	G
Template Known Secondary structure										T	T										S		T	T	S																	.						T	T	S		T	T								.	T	T			S
Template Predicted Secondary structure																																										.																			.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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