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Job DescriptionP0C0R7
Confidence98.35%DateWed Jan 25 15:20:35 GMT 2012
Rank230Aligned Residues173
% Identity12%Templatec3fzgA_
PDB info PDB header:transferaseChain: A: PDB Molecule:16s rrna methylase; PDBTitle: structure of the 16s rrna methylase arma
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   20.........30.........40. ........50.........60.........70.........80......
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Query Sequence  DKYVQQAQKKGLRSRAWFKLDE. . . . . . . . . . . . IQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP.
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Template Sequence  DKLLKKYNQGQLSIEDLLKIHSSTNERVATLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNEN. EKIIYHAYDIDRA
Template Known Secondary structure  TTS

STTGGGS


ST
TT
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S
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   63......70.........80.........90.........100.........110.........120........ .130.........140.
 
   87..90.........100.........110.........120.........130.........140.........150.........160......
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Query Sequence  MDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF
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Template Sequence  EIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKM. . . . . . . . . . . LPVLKQQDVNILDFLQLFHTQNFVISFPI
Template Known Secondary structure  S

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   142.......150.........160.........170.........180. ........190.........200.........210
 
   167 ..170.........180.........190.........200.......
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Query Sequence  Q. . . . . GEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGR
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Template Sequence  KSLSEKGMEENYQLWFESFTKGWIKILDSK. . . VIGNELVYITSGF
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   211........220.........230.........240 .........250...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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