Job Description P0C0R7 Confidence 98.31% Date Wed Jan 25 15:20:35 GMT 2012 Rank 234 Aligned Residues 140 % Identity 19% Template c3bwbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of the apo form of spermidine synthase from2 trypanosoma cruzi at 2.5 a resolution Resolution 2.50 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.																.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	T	V	V	D	L	G	A	A	P	G	G	W	S	Q	Y	V	V	T	Q	I	G	G	K	G	R	I	I	A	C	D	L	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	D	P	I	V	G	V	D	F	L	Q	G	D	F	R	D	E	L	V	M	K	A	L	L	E	R	V	G	D	S	K
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Conservation																						.																																											.	.	.	.	.	.
Template Sequence		E	R	V	L	I	I	G	G	G	D	G	G	V	L	R	E	V	L	R	H	.	G	T	V	E	H	C	D	L	V	D	I	D	G	E	V	X	E	Q	S	K	Q	H	F	P	Q	I	S	R	S	L	A	D	P	R	A	T	V	R	V	G	D	G	.	.	.	.	.	.	L	A	F	V	R	Q	T	P	D	N	T
Template Known Secondary structure										T	T	S							T	T		.	T	T									S																	G	G	G	G		T	T						S			.	.	.	.	.	.						T	S		T	T
Template Predicted Secondary structure																						.																																											.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.							.	160	.	.	.	.	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.					.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																																																		.	.	.	.																	.
Query SS confidence																																																		.	.	.	.																	.
Query Sequence		V	Q	V	V	M	S	D	M	A	P	N	M	S	G	T	P	A	V	D	I	P	R	A	M	Y	L	V	E	L	A	L	E	M	C	R	D	V	L	A	P	G	G	S	F	V	V	K	V	.	.	.	.	F	Q	G	E	G	F	D	E	Y	L	R	E	I	R	S	L	.	F	T	K	V	K	V	R	K	P	D	S
Query Conservation																																																		.	.	.	.																	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.																					.	.	.	.																	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	D	V	V	I	I	D	T	T	D	P	A	S	K	L	F	G	E	.	.	.	.	.	.	.	.	.	.	A	F	Y	K	D	V	L	R	I	L	K	P	D	G	I	C	C	N	Q	G	E	S	I	W	L	D	L	E	L	I	E	K	X	S	R	F	I	R	E	T	G	F	A	S	V	Q	Y	A	L	X	H	V
Template Known Secondary structure										S						S	S			.	.	.	.	.	.	.	.	.	.																							T	T	T																T		S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.											.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
			193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	S	R	A	R	S	R	E	V	Y	I	V	A	T	G	R	K	P
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		P	T	Y	P	C	G	S	I	G	T	L	V	C	S	K	K	A	G
Template Known Secondary structure		T	T	S	T	T	S									S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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