Job Description P0C0R7 Confidence 98.14% Date Wed Jan 25 15:20:35 GMT 2012 Rank 253 Aligned Residues 129 % Identity 14% Template c2cmgA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of spermidine synthase from helicobacter2 pylori Resolution 2.0 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.												.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	T	V	V	D	L	G	A	A	P	G	G	W	S	Q	Y	V	V	T	Q	I	G	G	K	G	R	I	I	A	C	D	L	L	P	.	.	.	.	.	.	.	.	.	.	.	M	D	P	I	V	G	V	D	F	L	Q	G	D	F	R	D	E	L	V	M	K	A	L	L	E	R	V	G	D	S	K	V	Q	V	V
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.												.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation																						.	.	.																																									.	.	.	.	.	.	.
Template Sequence		K	E	V	L	I	V	D	G	F	D	L	E	L	A	H	Q	L	F	K	Y	.	.	.	D	T	H	I	D	F	V	Q	A	D	E	K	I	L	D	S	F	I	S	F	F	P	H	F	H	E	V	K	N	N	K	N	F	T	H	A	K	Q	L	L	.	.	.	.	.	.	.	D	L	D	I	K	K	Y	D	L	I
Template Known Secondary structure								S	S										T	T	S	.	.	.	S								S						G	G	G	T	T	T	S	T	T						T		T	T					S	S	G	G	.	.	.	.	.	.	.	G	S
Template Predicted Secondary structure																						.	.	.																																									.	.	.	.	.	.	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.								.	.	.	.	.	.	140	.	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170					.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.
Query SS confidence																																																			.	.	.	.
Query Sequence		M	S	D	M	A	P	N	M	S	G	T	P	A	V	D	I	P	R	A	M	Y	L	V	E	L	A	L	E	M	C	R	D	V	L	A	P	G	G	S	F	V	V	K	V	F	Q	G	E	G	.	.	.	.	F	D	E	Y	L	R	E	I	R	S	L	F	T	K	V	K	V	R	K	P	D	S	S	R	A	R	S
Query Conservation																																																			.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.																			.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.
Template Sequence		F	C	L	Q	E	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	H	R	I	D	G	L	K	R	M	L	K	E	D	G	V	F	I	S	V	A	K	H	P	L	L	E	H	V	S	M	Q	N	A	L	K	N	M	G	G	V	F	S	V	A	M	P	F	.	.	V	A	P	L	R	I	L
Template Known Secondary structure				S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T														T	T	T														T	T		S						.	.			T	T		T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.
Template SS confidence
		144	.	.	.	.	.	150																	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.			.	200	.	.	.	.	.
		198	.		200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		R	E	.	V	Y	I	V	A	T	G	R	K	P
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		S	N	K	G	Y	I	Y	A	S	F	K	T	H
Template Known Secondary structure											S	S
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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