Return to main results Retrieve Phyre Job Id

Job DescriptionP40710
Confidence100.00%DateThu Jan 5 12:01:13 GMT 2012
Rank2Aligned Residues101
% Identity36%Templatec3lhnB_
PDB info PDB header:lipid binding proteinChain: B: PDB Molecule:lipoprotein; PDBTitle: crystal structure of putative lipoprotein (np_718719.1) from2 shewanella oneidensis at 1.42 a resolution
Resolution1.42 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33......40.........50.........60.........70.........80.........90.........100.........110..
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  AQAAELKPMPQSWRGVLPCADCEGIETSLFLEKDGTWVMNERYLGAREEPSSFASYGTWARTADKLVLTDSKGEKSYYRA
Query Conservation            


 
 





 

 
 


  



 
   



          
 
      
 
         
 
Alig confidence 






































































....




Template Conservation        


 


 
 





 

 
 


  



 
   


         
   
      
 
   ....  
 
Template Sequence  DTSQNALDWPGVYEGVLPCASCEGIQTTLTLQADNSFELKSIYLGKDESIFKVAGKFDWDSNGSKITLSDG. . . . SKYLV
Template Known Secondary structure 
SS




TTSS

TTS
SSS


TTS

TTS....
Template Predicted Secondary structure 

































....
Template SS confidence 















































































   45....50.........60.........70.........80.........90.........100.........110..... ....120
 
   113......120.........130. ......
Predicted Secondary structure 













..
Query SS confidence 


















. .





Query Sequence  KGDALEMLDREGNPIESQF. . NYTLEA
Query Conservation   
  
 


  
  
 
 
..

 
 
Alig confidence 


















..





Template Conservation      
  

  
  
   

  
 
 
Template Sequence  GENQLLXLDTEGNRITGGLAEHYILKK
Template Known Secondary structure  TT

TTS



STTGGGG
Template Predicted Secondary structure 















Template SS confidence 


























   121........130.........140.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions