Job Description P0AFR7 Confidence 100.00% Date Thu Jan 5 11:27:05 GMT 2012 Rank 1 Aligned Residues 281 % Identity 27% Template c3fh6F_ PDB info PDB header:transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli Resolution 4.50 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.							.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																													.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.
Query Sequence		S	D	M	P	F	A	L	L	L	L	A	P	S	L	L	L	L	G	G	L	V	A	W	P	M	V	S	N	I	E	I	S	F	L	R	L	P	L	N	P	N	I	E	.	.	.	.	.	.	S	T	F	V	G	V	S	N	Y	V	R	I	L	S	D	P	G	F	W	H	S	L	W	M	T	V	W	Y	T	A	L
Query Conservation																																													.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.
Template Conservation
Template Sequence		L	S	S	A	G	L	Y	I	Y	V	Y	P	G	M	A	G	M	G	L	F	V	L	F	P	L	V	C	T	I	A	I	A	F	T	N	Y	S	S	T	N	Q	L	T	F	E	R	A	Q	E	V	L	L	D	R	S	K	N	F	T	R	V	F	T	D	E	G	I	Q	K	P	F	L	A	I	F	V	W	T	V	V
Template Known Secondary structure																						T									T	T	S	S	S	S		S	S	S		S	S											T				T	T					S		S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.						.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.
Query SS confidence																		.	.	.	.	.
Query Sequence		V	V	A	G	S	T	V	L	G	L	A	V	A	M	F	F	.	.	.	.	.	N	R	E	F	R	L	R	K	T	A	R	S	L	V	I	L	S	Y	V	T	P	S	I	S	L	V	F	A	W	K	Y	M	F	N	N	G	Y	G	I	V	N	Y	L	G	V	D	L	L	H	L	Y	E	Q	A	P	L	W	F	D
Query Conservation																		.	.	.	.	.
Alig confidence																		.	.	.	.	.																																																			.	.	.
Template Conservation																																																																									.	.	.
Template Sequence		F	S	L	I	T	V	F	L	T	V	A	V	G	M	V	L	A	C	L	V	Q	W	E	A	L	R	G	K	A	V	Y	R	V	L	L	I	L	P	Y	A	V	P	S	F	I	S	I	L	I	F	K	G	L	F	N	Q	S	F	G	E	I	N	M	M	L	S	A	L	F	G	V	.	.	.	K	P	A	W	F	S
Template Known Secondary structure																						T		S	S	S	S															S		S											S		S	S	S	S										S	S		.	.	.				S	S	S
Template Predicted Secondary structure																																																																									.	.	.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.				.	.	360	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	G	S	S	F	V	L	V	V	L	F	A	I	W	R	Y	F	P	Y	A	F	I	S	F	L	A	I	L	Q	T	I	D	K	S	L	Y	E	A	A	E	M	D	G	A	N	A	W	Q	R	F	R	I	V	T	L	P	A	I	M	P	V	L	A	T	V	V	T	L	R	T	I	W	M	F	Y	M	F	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	P	T	T	A	R	T	M	L	I	I	V	N	T	W	L	G	Y	P	Y	M	M	I	L	C	M	G	L	L	K	A	I	P	D	D	L	Y	E	A	S	A	M	D	G	A	G	P	F	Q	N	F	F	K	I	T	L	P	L	L	I	K	P	L	T	P	L	M	I	A	S	F	A	F	N	F	N	N	F	V	L
Template Known Secondary structure		S																															S															S							T	T	T	T	T	T																	T
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
		238	.	240	.	.	.	.														.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260				.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Query Sequence		V	Y	L	L	T	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	I	L	G	V	Y	L	Y	K	T	A	F	A	F	N	.	.	.	D	L	G	K	A	A	A	I	S	V	V	L	F	I	I	I	F	A	V	I	L	L	T	R	K	R	V	N	L	N	G	N
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation
Template Sequence		I	Q	L	L	T	N	G	G	P	D	R	L	G	T	T	T	P	A	G	Y	T	D	L	L	V	N	Y	T	Y	R	I	A	F	E	G	G	G	G	Q	D	F	G	L	A	A	A	I	A	T	L	I	F	L	L	V	G	A	L	A	I	V	N	L	K	A	T	R	M	K	F	D
Template Known Secondary structure							S	S		S			S	S		S	S	S			S	S										T	T		S	S	S	S		S	S																										S	S
Template Predicted Secondary structure
Template SS confidence
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions