Phyre 2 alignment of P0A821 with d2gsaa

Job Description P0A821
Confidence 99.91% Date Thu Jan 5 11:06:39 GMT 2012

Rank 71 Aligned Residues 312

% Identity 15% Template d2gsaa_

SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like

Resolution 2.40

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																																																						.								.	.	.
Query SS confidence																																																						.								.	.	.
Query Sequence	R	Q	M	L	D	E	A	R	E	V	I	R	G	S	Q	T	L	P	A	W	C	E	N	W	A	Q	E	V	D	A	R	L	T	K	E	A	Q	S	A	L	R	P	V	I	N	L	T	G	T	V	L	H	T	.	N	L	G	R	A	L	Q	.	.	.	A	E	A	A	V	E	A	V	A	Q	A	M	R	S	P	V
Query Conservation																																																						.								.	.	.
Alig confidence																												.																										.								.	.	.
Template Conservation																												.
Template Sequence	D	E	I	F	A	A	A	Q	K	L	M	P	G	G	V	S	S	P	V	R	A	F	K	S	V	G	G	.	Q	P	I	V	F	D	R	V	K	D	A	Y	A	W	D	V	D	G	N	R	Y	I	D	Y	V	G	T	W	G	P	A	I	C	G	H	A	H	P	E	V	I	E	A	L	K	V	A	M	E	K	G	T
Template Known Secondary structure											S	G	G	G	S	S	S	G	G	G			T	T	T	S	S	.										B	T					T	T	S						S	S	G	G	G	T	T	T	T	T		B	T													T	T		S
Template Predicted Secondary structure																												.
Template SS confidence
	13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.

	117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.				.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																											.																							.	.	.																					.	.	.	.	.	.	.	.
Query SS confidence																											.																							.	.	.																					.	.	.	.	.	.	.	.
Query Sequence	T	L	E	Y	D	L	D	D	A	G	R	G	H	R	D	R	A	L	A	Q	L	L	C	R	I	T	.	G	A	E	D	A	C	I	V	N	N	N	A	A	A	V	L	L	M	L	A	A	T	.	.	.	A	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	.	.	.	.	.	.	.	.
Query Conservation																											.																							.	.	.																					.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.																			.																							.	.	.																					.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.
Template Sequence	S	F	.	.	.	.	.	.	G	A	P	C	A	L	E	N	V	L	A	E	M	V	N	D	A	V	P	S	I	E	M	V	R	F	V	N	S	G	T	E	A	C	M	A	V	L	R	L	M	R	A	Y	T	G	R	D	K	I	I	K	F	E	G	C	Y	H	G	H	A	D	M	F	L	V	K	A	G	S	G	V
Template Known Secondary structure			.	.	.	.	.	.	S	S																S	T	T		S						S	S																									T	T					S		G	G	G		S	S
Template Predicted Secondary structure			.	.	.	.	.	.
Template SS confidence
	92	.							.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.

							185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	R	I	P	D	V	M	R	Q	A	G	C	T	L	H	E	V	G	T	T	N	R	T	H	A	N	D	Y	R	Q	A	V	N	E	N	T	A	L	L	M	K	V	H	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D	V	P	V	V	T	D
Query Conservation	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.
Template Conservation
Template Sequence	A	T	L	G	L	P	S	S	P	G	V	P	K	K	T	T	A	N	T	L	T	T	P	Y	N	D	L	E	A	V	K	A	L	F	A	E	N	P	G	E	I	A	G	V	I	L	E	P	I	V	G	N	S	G	F	I	V	P	D	A	G	F	L	E	G	L	R	E	I	T	L	E	H	D	A	L	L	V	F	D
Template Known Secondary structure			T	T			S		S	S	S						T	T						T	T										T	T	S	T	T	T								S	S	B		S	S	S		B				T	T												T	T
Template Predicted Secondary structure
Template SS confidence
	166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.

	259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.				320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.
Query SS confidence																																																														.	.	.
Query Sequence	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	L	V	S	F	S	G	D	K	L	L	G	G	P	Q	A	G	I	I	V	G	K	K	E	M	I	A	R	L	Q	S	H	P	.	.	.	L	K	R	A	L	R	A	D	K	M	T	L	A	A	L	E
Query Conservation																																																														.	.	.
Alig confidence													.	.	.	.	.	.	.																				.																							.	.	.
Template Conservation													.	.	.	.	.	.	.																				.
Template Sequence	E	V	M	T	G	F	R	I	A	Y	G	G	.	.	.	.	.	.	.	V	Q	E	K	F	G	V	T	P	D	L	T	T	L	G	K	I	I	G	.	G	G	L	P	V	G	A	Y	G	G	K	R	E	I	M	Q	L	V	A	P	A	G	P	M	Y	Q	A	G	T	L	S	G	N	P	L	A	M	T	A	G	I
Template Known Secondary structure		T	T	T	B	T	T	T	B	T	T		.	.	.	.	.	.	.					T	T				S						G	G	G	G	.	T	T	S													T	T	B	T	T	T	S	S	B					T	T	T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.																				.
Template SS confidence
	246	.	.	.	250	.	.	.	.	.	.	.								.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.

	336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence	K	T	L	E	L	L	R	Q	P	G	T	Y	E	Y	L	D	Q	I	T	K	R	L	S	D	G	L	L	A	I	A	Q	E
Template Known Secondary structure							T	S	T	T
Template Predicted Secondary structure
Template SS confidence
	318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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