Phyre 2 alignment of P0A821 with d1o4sa

Job Description P0A821
Confidence 99.86% Date Thu Jan 5 11:06:39 GMT 2012

Rank 134 Aligned Residues 325

% Identity 15% Template d1o4sa_

SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like

Resolution 1.90

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.					.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.
Query SS confidence																																																																	.	.	.	.
Query Sequence	R	P	V	I	N	L	T	G	T	V	L	H	T	N	L	G	R	A	L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	R	S	P	V	T	L	E	Y	D	L	D	D	A	G	R	G	H	R	D	R	A	L	A	Q	L	L	C	R	I	T	G	A	.	.	.	.	E	D	A	C	I	V	N	N	N	A	A	A
Query Conservation																																																																	.	.	.	.
Alig confidence								.	.	.	.	.																					.															.																	.	.	.	.
Template Conservation								.	.	.	.	.																					.															.
Template Sequence	E	D	V	I	N	L	T	.	.	.	.	.	A	G	E	P	D	F	P	T	P	E	P	V	V	E	E	A	V	R	F	L	.	Q	K	G	E	V	K	Y	T	D	P	R	G	I	Y	.	E	L	R	E	G	I	A	K	R	I	G	E	R	Y	K	K	D	I	S	P	D	Q	V	V	V	T	N	G	A	K	Q	A
Template Known Secondary structure								.	.	.	.	.		S	S		S	S															.	T	T								T	T				.															T					G	G	G					S
Template Predicted Secondary structure								.	.	.	.	.																					.															.
Template SS confidence
	29	30	.	.	.	.	.						.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.

	157	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.					.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure										.																																								.	.	.	.
Query SS confidence										.																																								.	.	.	.
Query Sequence	V	L	L	M	L	A	A	T	A	.	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C	T	L	H	E	V	G	T	T	N	.	.	.	.	R	T	H	A	N	D	Y	R	Q	A	V	N	E	N	T	A	L	L	M	K	V	H	T	S	N	Y	S
Query Conservation										.																																								.	.	.	.
Alig confidence										.																.	.	.	.	.	.																			.	.	.	.
Template Conservation																										.	.	.	.	.	.
Template Sequence	L	F	N	A	F	M	A	L	L	D	P	G	D	E	V	I	V	F	S	P	V	W	V	S	Y	.	.	.	.	.	.	I	P	Q	I	I	L	A	G	G	T	V	N	V	V	E	T	F	M	S	K	N	F	Q	P	S	L	E	E	V	E	G	L	L	V	G	K	T	K	A	V	L	I	N	S	P	N	N	P	T
Template Known Secondary structure											T	T								S			T	T		.	.	.	.	.	.							T	T										G	G	G	T	T										T			T	T								S	S		T	T	T
Template Predicted Secondary structure																										.	.	.	.	.	.
Template SS confidence
	102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.							.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.

	232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.
Query SS confidence																																																																							.	.
Query Sequence	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D	V	P	V	V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	L	V	S	F	S	G	D	K	L	L	G	G	P	Q	.	.	A	G	I	I	V	G	K	K
Query Conservation																																																																							.	.
Alig confidence								.																																			.	.	.	.																									.	.
Template Conservation								.																																			.	.	.	.
Template Sequence	G	V	V	Y	R	R	E	.	F	L	E	G	L	V	R	L	A	K	K	R	N	F	Y	I	I	S	D	E	V	Y	D	S	L	V	Y	T	D	E	F	T	S	I	.	.	.	.	L	D	V	S	E	G	F	D	R	I	V	Y	I	N	G	F	S	K	S	H	S	M	T	G	W	R	V	G	Y	L	I	S	S	E
Template Known Secondary structure								.													T								T	T	T	T	S	B		S	S						.	.	.	.					S	S	S	T	T							S	T	T	T	T	T		G	G	G
Template Predicted Secondary structure								.																																			.	.	.	.
Template SS confidence
	176	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.					.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	M	I	A	R	L	Q	S	H	P	L	K	R	A	L	R	A	D	K	M	T	L	A	A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q	A	Q	R	L	Q	A	P	L	A	A	H	Y	G	A	E	F	A	V	Q	V	M	P
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Sequence	K	V	A	T	A	V	S	K	I	Q	S	H	T	T	S	C	I	N	T	V	A	Q	Y	A	A	L	K	A	L	E	V	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Y	M	V	Q	T	F	K	E	R	K	N	F	V	V	E	R	L	K	K	M	.	.	.	.	.	G	V	K	F	V	E
Template Known Secondary structure														T		S													T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					T	.	.	.	.	.	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template SS confidence
	251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.																.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.						.	.	.	.	.	310

	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440				.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure																																																				.	.	.
Query SS confidence																																																				.	.	.
Query Sequence	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	G	S	H	L	E	S	L	A	A	R	W	R	E	L	P	V	P	V	I	G	R	I	Y	.	.	.	D	G	R	L	W	L	D	L	R	C	L	E	D	E	Q	R	F	L	E	M	L
Query Conservation																																																				.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.											.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.
Template Sequence	P	E	G	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	L	F	F	K	V	R	G	D	D	V	K	F	C	E	R	L	L	E	E	K	K	V	A	L	V	P	G	S	A	F	L	K	P	G	F	V	R	L	S	F	A	T	.	.	S	I	E	R	L	T	E	A	L
Template Known Secondary structure		S	B	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S																				G	G	G	G	T		T	T								S	.	.
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.
Template SS confidence
	311	.	.	.	.																	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.			.	360	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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