Job Description P0A821 Confidence 99.82% Date Thu Jan 5 11:06:39 GMT 2012 Rank 181 Aligned Residues 366 % Identity 11% Template c3t18D_ PDB info PDB header:transferase Chain: D: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548. Resolution 2.86 Å

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	W	C	E	N	W	A	Q	E	V	D	A	R	L	T	K	E	A	Q	S	A	L	R	P	V	I	N	L	T	G	T	V	L	H	T	N	L	G	R	A	L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	R	S	P	V	T	L	E	Y	D	L	D	D	A	G	R	G	H	R	D	R	A	L	A	Q	L
Query Conservation
Alig confidence																																																													.											.	.	.	.	.
Template Conservation																																																													.											.	.	.	.	.
Template Sequence		N	N	G	P	D	L	A	F	D	I	N	N	K	A	N	A	A	I	E	K	Y	G	R	E	A	V	I	N	A	A	L	G	T	L	L	D	D	K	G	K	I	I	A	L	P	S	V	Y	D	R	L	D	E	X	D	R	S	H	I	.	A	S	Y	A	P	I	E	G	E	K	.	.	.	.	.	D	Y	R	K	I
Template Known Secondary structure																								G	G	G						S				B		T	T	S		B												T	S		G	G	G	T	.	S	S				T	T				.	.	.	.	.
Template Predicted Secondary structure																																																													.											.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.						80	.	.	.	.
		138	.	140	.								.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.																									.																																											.	.
Query SS confidence						.	.	.	.	.	.	.																									.																																											.	.
Query Sequence		L	C	R	I	.	.	.	.	.	.	.	T	G	A	E	D	A	C	I	V	N	N	N	A	A	A	V	L	L	M	L	A	A	T	A	.	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C	T	L	H	E	V	G	T	T	N	R	T	H	.	.
Query Conservation						.	.	.	.	.	.	.																									.																																											.	.
Alig confidence						.	.	.	.	.	.	.																									.																.	.	.	.	.	.																						.	.
Template Conservation																																																					.	.	.	.	.	.
Template Sequence		V	I	D	T	L	F	G	P	Y	K	P	E	G	Y	I	S	A	I	A	T	P	G	G	T	G	A	I	R	S	A	I	F	S	Y	L	D	E	G	D	P	L	I	C	H	D	Y	Y	W	A	P	Y	.	.	.	.	.	.	R	K	I	C	E	E	F	G	R	N	F	K	T	F	E	F	F	T	D	D	F	A	F
Template Known Secondary structure								G	G	G			S	S								S													T	S		S	S							S	S			T			.	.	.	.	.	.								T									B		S	S	S	S	B
Template Predicted Secondary structure																																																					.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.							.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
							208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250							.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																				.	.																									.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																				.	.																									.	.	.	.	.	.
Query Sequence		.	.	.	.	.	A	N	D	Y	R	Q	A	V	N	E	N	T	A	L	L	M	K	V	H	.	.	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	.	.	.	.	.	.	L	D	V	P	V	V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K
Query Conservation		.	.	.	.	.																				.	.																									.	.	.	.	.	.
Alig confidence		.	.	.	.	.																				.	.													.												.	.	.	.	.	.
Template Conservation																																								.
Template Sequence		N	I	D	V	Y	K	E	A	I	D	E	G	I	R	D	S	D	R	I	A	S	L	I	N	S	P	G	N	N	P	T	G	Y	S	L	S	D	E	.	E	W	D	E	V	I	T	F	L	K	E	K	A	E	D	K	D	K	K	I	T	L	I	V	D	V	A	Y	L	E	F	A	G	D	G	D	Q	Q	R	K	F
Template Known Secondary structure																S		S									S	S		T	T	T								.							T	T	T	T	T	T	T	T	S	T	T										T	T		T	T	S	S	S	S	S	S	S	S	T	T
Template Predicted Secondary structure																																								.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		E	P	M	P	Q	E	L	I	A	A	G	V	S	L	V	S	F	S	G	D	K	L	L	G	G	P	Q	.	.	A	G	I	I	V	G	K	K	E	M	I	A	R	L	Q	S	H	P	L	K	R	A	L	R	A	D	K	M	T	L	A	A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P
Query Conservation																													.	.
Alig confidence																													.	.
Template Conservation
Template Sequence		F	E	K	F	S	N	L	P	R	N	L	F	V	V	V	A	F	S	X	S	K	S	H	T	A	Y	G	L	R	S	G	A	A	V	G	I	S	S	S	K	E	I	I	E	E	F	E	A	S	L	A	H	S	A	R	C	N	W	S	N	G	T	H	A	A	Q	N	I	L	I	E	L	E	R	A	E	N	K	K	I
Template Known Secondary structure		T	G	G	G	S	S			T	T														T		G	G	G										S																				T	S	S							T	T	T	S	S	T	T	S	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q	A	Q	R	L	Q	A	P	L	A	A	H	Y	G	A	E	F	A	V	Q	V	M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	G	S	H	L	E	S	L	A	A	R	W	R	E	L	P
Query Conservation
Alig confidence																												.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation																												.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Sequence		Y	E	Q	E	L	V	D	L	R	N	X	L	K	S	R	A	D	V	F	V	T	A	A	K	E	N	.	.	.	.	.	K	L	T	X	I	P	Y	F	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	F	T	F	I	P	T	D	K	A	F	D	I	V	K	D	L	E	.	.	K
Template Known Secondary structure																												.	.	.	.	.	T								S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S							S											.	.	T
Template Predicted Secondary structure																												.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.						.	.	.	.	.	.	350	.	.	.																			.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.			.
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.			450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		V	P	V	I	G	R	I	Y	D	G	R	L	W	L	D	L	R	.	.	C	L	E	D	E	Q	R	F	L	E	M	L
Query Conservation																			.	.
Alig confidence																			.	.
Template Conservation
Template Sequence		E	N	I	F	T	I	P	S	A	K	G	I	R	V	A	I	C	G	V	G	E	E	K	I	P	K	L	V	Q	R	L
Template Known Secondary structure		T	T							S	S						S	T	T	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions