Job Description P0A821 Confidence 99.94% Date Thu Jan 5 11:06:39 GMT 2012 Rank 43 Aligned Residues 335 % Identity 12% Template c3ruyB_ PDB info PDB header:transferase Chain: B: PDB Molecule:ornithine aminotransferase; PDBTitle: crystal structure of the ornithine-oxo acid transaminase rocd from2 bacillus anthracis Resolution 2.65 Å

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		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.							.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.
Query Sequence		K	E	A	Q	S	A	L	R	P	V	I	N	L	T	G	T	V	L	H	.	.	.	.	.	.	T	N	L	G	R	A	L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	R	S	P	V	T	L	E	Y	D	L	D	D	A	G	R	G	H	R	D	R	A	L	A	Q	L	L	C	R	I	T	G	A	E	D	A
Query Conservation																					.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.							.	.																					.	.	.	.
Template Conservation																																	.	.																					.	.	.	.
Template Sequence		S	K	A	E	G	V	W	V	E	D	P	E	G	N	R	Y	M	D	L	L	S	A	Y	S	A	V	N	Q	G	H	R	.	.	H	P	K	I	I	N	A	L	I	D	Q	A	N	R	V	T	L	T	S	R	.	.	.	.	A	F	H	S	D	Q	L	G	P	W	Y	E	K	V	A	K	L	T	N	K	E	M	V
Template Known Secondary structure						B	T					T	T							S	S					T		T	T		B	T	.	.												T	T	T		S				T	.	.	.	.	T	S			S	S													T		S
Template Predicted Secondary structure																																	.	.																					.	.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.					.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.												.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.										.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Query Sequence		C	I	V	N	N	N	A	A	A	V	L	L	M	L	A	A	T	A	.	.	.	.	.	.	.	.	.	.	.	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C	T	.	.	.	.	.	.	.	.	.	L	H	E	V	G	T	T	N	R	T	H
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.												.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.
Template Sequence		L	P	M	N	T	G	A	E	A	V	E	T	A	I	K	T	A	R	R	W	A	Y	D	V	K	K	V	E	A	N	R	A	E	I	I	V	C	E	D	N	F	H	G	R	.	.	.	.	.	T	M	G	A	V	S	M	S	S	N	E	E	Y	K	R	G	F	G	P	M	L	P	G	I	I	V	I	P	Y	G	D
Template Known Secondary structure					S	S																			T	S				T	T								T	T					S	.	.	.	.	.	S					T	T		S		T	T	T	T	T	T			S			S	S						T	T
Template Predicted Secondary structure																																														.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.						.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	D	Y	R	Q	A	V	N	E	N	T	A	L	L	M	K	V	H	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D	V	P	V	V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S
Query Conservation
Alig confidence																																																																	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.
Template Sequence		L	E	A	L	K	A	A	I	T	P	N	T	A	A	F	I	L	E	P	I	Q	G	E	A	G	I	N	I	P	P	A	G	F	L	K	E	A	L	E	V	C	K	K	E	N	V	L	F	V	A	D	E	I	Q	T	G	L	G	R	T	G	K	V	.	.	.	.	.	.	F	A	C	D	W	D	N	V	T	P	D
Template Known Secondary structure											T	T								S	S	B	T	T	T	T	S	B				T	T												T	T								T	T	T	T	T	T	T	T	S	S	S	.	.	.	.	.	.	S	G	G	G	G	G	T				S
Template Predicted Secondary structure																																																																	.	.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.							.	240	.	.	.	.	.	.	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	S	F	S	G	D	K	L	L	G	G	P	Q	A	G	I	I	V	G	K	K	E	M	I	A	R	L	Q	S	H	P	L	K	R	A	L	R	A	D	K	M	T	L	A	A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q
Query Conservation
Alig confidence											.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	Y	I	L	G	A	L	G	G	.	G	V	F	P	I	S	C	A	A	A	N	R	D	I	L	G	V	F	E	P	G	S	H	G	S	T	F	G	G	N	P	L	A	C	A	V	S	I	A	A	L	E	V	L	E	E	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	E	R	S	L	Q	L
Template Known Secondary structure								T	T	T	.	T	T	S													T	T			T	T	S	S			S	S	T	T																		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.															.	.	.	310	.	.	.	.
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	R	L	Q	A	P	L	A	A	H	Y	G	A	E	F	A	V	Q	V	M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	G	S	H	L	E	S	L	A	A	R	W	R	E	L	P	V	P	V	I	G	R	I	Y	D	G	R	L	W	L	D
Query Conservation
Alig confidence																	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template Conservation																	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template Sequence		G	E	K	L	V	G	Q	L	K	E	I	D	N	P	M	.	.	.	.	.	.	.	I	T	E	V	R	G	K	G	L	F	I	G	I	E	L	N	E	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	R	P	Y	C	E	Q	L	K	A	A	G	L	.	L	C	K	E	T	H	E	N	V	I	R	I	A
Template Known Secondary structure										T	T				T	T	.	.	.	.	.	.	.								T	T							S	S	.	.	.	.	.	.	.	.	.	.	.	.	.		S											T		.						T	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330								.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.														.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.	.	370	.	.	.	.
		448	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	C	L	E	D	E	Q	R	F	L	E	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	P	L	V	I	S	E	E	D	L	E	W	A	F
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions