Job Description P0A821 Confidence 99.82% Date Thu Jan 5 11:06:39 GMT 2012 Rank 186 Aligned Residues 338 % Identity 12% Template c3rq1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.								.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.
Query Sequence		P	V	I	N	L	T	G	T	V	L	H	T	N	L	G	R	A	L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	R	S	P	V	T	L	E	Y	D	L	D	D	A	G	R	G	H	R	D	R	A	L	A	Q	L	L	C	R	I	T	.	.	.	.	.	.	.	G	A	E	D	A	C	I	V	N	N	N	A
Query Conservation																																																															.	.	.	.	.	.	.
Alig confidence																																			.													.	.	.	.	.											.	.	.	.	.	.	.
Template Conservation																																			.													.	.	.	.	.
Template Sequence		N	V	V	N	G	T	L	G	A	I	H	D	E	E	G	N	L	V	F	L	K	T	V	K	E	E	Y	L	S	L	S	D	S	.	E	H	V	G	Y	A	P	I	A	G	I	P	.	.	.	.	.	D	F	L	C	A	A	E	K	E	C	F	G	N	F	R	P	E	G	H	I	R	S	I	A	T	A	G	G	T
Template Known Secondary structure		G						S	S			B		T	T	S		B												T					.				S				T	T				.	.	.	.	.												G	G	G			S	S								S
Template Predicted Secondary structure																																			.													.	.	.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80						.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.				.	.	.	.	.	.	.	.	210	.	.	.	.	.						.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure													.																																					.	.	.															.	.	.	.	.
Query SS confidence													.																																					.	.	.															.	.	.	.	.
Query Sequence		A	A	V	L	L	M	L	A	A	T	A	.	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C	T	L	H	E	V	G	.	.	.	T	T	N	R	T	H	A	N	D	Y	R	Q	A	V	.	.	.	.	.	N	E	N	T	A	L	L	M	K	V
Query Conservation													.																																					.	.	.															.	.	.	.	.
Alig confidence													.																.	.	.	.	.	.																.	.	.															.	.	.	.	.
Template Conservation																													.	.	.	.	.	.
Template Sequence		G	G	I	H	H	L	I	H	N	Y	T	E	P	G	D	E	V	L	T	A	D	W	Y	W	G	A	Y	.	.	.	.	.	.	R	V	I	C	S	D	T	G	R	T	L	V	T	Y	S	L	F	D	E	H	N	N	F	N	H	E	A	F	Q	N	R	V	N	E	L	A	A	K	Q	T	N	V	V	V	I	F	N
Template Known Secondary structure												S		T	T							S	S			T			.	.	.	.	.	.							T	T								S	B		T	T	S	S	B																	S
Template Predicted Secondary structure																													.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.							.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		226	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250							.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure				.																								.	.	.	.	.	.
Query SS confidence				.																								.	.	.	.	.	.
Query Sequence		H	T	.	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	.	.	.	.	.	.	L	D	V	P	V	V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	L	V	S	F	S	G	D	K	L	L	G
Query Conservation				.																								.	.	.	.	.	.
Alig confidence				.												.												.	.	.	.	.	.
Template Conservation																.
Template Sequence		T	P	G	N	N	P	T	G	Y	S	I	E	D	K	.	D	W	D	S	I	L	N	F	L	K	D	L	V	A	I	G	R	N	N	V	I	I	G	I	D	V	A	Y	L	D	Y	S	G	E	K	D	E	V	R	A	F	F	N	K	F	S	H	L	P	K	E	I	L	T	C	V	C	Y	S	L	S	K	G	F	T
Template Known Secondary structure			S	S		T	T	T								.															T	S	S										T	T	G	G	G	S	S							G	G	G	G	G	G	T	T			T	T									S	T	T	T	T	T
Template Predicted Secondary structure																.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
				299	300	.	.	.	.	.	.	.	.								.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.											.	.	.	.	.	.	.
Query SS confidence		.	.											.	.	.	.	.	.	.
Query Sequence		.	.	G	P	Q	A	G	I	I	V	G	K	.	.	.	.	.	.	.	K	E	M	I	A	R	L	Q	S	H	P	L	K	R	A	L	R	A	D	K	M	T	L	A	A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q	A	Q
Query Conservation		.	.											.	.	.	.	.	.	.
Alig confidence		.	.											.	.	.	.	.	.	.																																	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.
Template Sequence		X	Y	G	Q	R	V	G	A	X	I	G	I	S	D	D	E	E	I	A	D	E	F	F	E	V	N	K	S	T	S	R	A	T	W	S	N	I	C	R	P	A	X	R	T	X	A	N	I	V	A	D	.	.	.	.	.	.	P	A	K	F	K	E	Y	E	A	E	R	N	C	Y	Y	Q	L	I	R	D	R	A	D
Template Known Secondary structure				S	S										S	S																			T	S	S														T		.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.							.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	Q	A	P	L	A	A	H	Y	G	A	E	F	A	V	Q	V	M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	G	S	H	L	E	S	L	A	A	R	W	R	E	L	P	V	P	V	I	G	R	I	Y	D	G	R	L	W	L	D	L	R
Query Conservation
Alig confidence											.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation											.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Sequence		I	F	K	Q	E	A	A	Q	V	.	.	.	.	.	G	L	P	X	L	P	Y	R	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	F	I	T	I	P	T	D	S	A	N	A	I	C	E	E	L	K	K	E	.	.	H	I	Y	V	I	A	L	A	N	G	I	R	I	A	A	C
Template Known Secondary structure											.	.	.	.	.	T								S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S							T	T											T	.	.	T							S	S						G	G
Template Predicted Secondary structure											.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template SS confidence
		337	.	.	340	.	.	.	.	.						.	.	.	.	350	.	.	.	.	.																			.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.			.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		450	.	.	.	.	.						.	.	.	.	460	.	.	.
Predicted Secondary structure								.	.	.	.	.
Query SS confidence								.	.	.	.	.
Query Sequence		C	L	E	D	E	Q	.	.	.	.	.	R	F	L	E	M	L	L	K
Query Conservation								.	.	.	.	.
Alig confidence								.	.	.	.	.
Template Conservation
Template Sequence		G	I	P	K	C	Q	X	T	G	L	A	E	K	I	Y	N	A	X	K
Template Known Secondary structure		G	S						T	T
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions