Job Description P0A821 Confidence 99.66% Date Thu Jan 5 11:06:39 GMT 2012 Rank 233 Aligned Residues 302 % Identity 9% Template c3qm2A_ PDB info PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: 2.25 angstrom crystal structure of phosphoserine aminotransferase2 (serc) from salmonella enterica subsp. enterica serovar typhimurium Resolution 2.25 Å

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		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.					.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.
Predicted Secondary structure																																																					.	.	.	.																						.
Query SS confidence																																																					.	.	.	.																						.
Query Sequence		N	L	G	R	A	L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	R	S	P	V	T	L	E	Y	D	L	D	D	A	G	R	G	H	R	D	R	A	L	A	Q	L	L	C	R	I	T	G	A	.	.	.	.	E	D	A	C	I	V	N	N	N	A	A	A	V	L	L	M	L	A	A	T	A	.	S	G	K
Query Conservation																																																					.	.	.	.																						.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.																						.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	S	G	P	A	M	L	P	A	E	V	L	K	L	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	E	V	A	E	E	A	E	Q	D	F	R	D	L	L	N	I	P	S	N	Y	K	V	L	F	C	H	G	G	G	R	G	Q	F	A	G	V	P	L	N	L	L	G	D	K	T
Template Known Secondary structure			S	S	S												T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T			T	T								S		T	T												T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.																			.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.				.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																															.	.	.																	.
Query SS confidence																															.	.	.																	.
Query Sequence		E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C	T	L	.	.	.	H	E	V	G	T	T	N	R	T	H	A	N	D	Y	R	Q	.	A	V	N	E	N	T	A	L	L	M	K	V	H	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L
Query Conservation																															.	.	.																	.
Alig confidence														.	.	.	.														.	.	.																	.																													.	.	.
Template Conservation														.	.	.	.																																																														.	.	.
Template Sequence		T	A	D	Y	V	D	A	G	Y	W	A	A	.	.	.	.	S	A	I	K	E	A	K	K	Y	C	A	P	Q	I	I	D	A	K	I	T	V	D	G	K	R	A	V	K	P	M	R	E	W	Q	L	S	D	N	A	A	Y	L	H	Y	C	P	N	E	T	I	D	G	I	A	I	D	E	T	P	D	F	.	.	.
Template Known Secondary structure								S	S					.	.	.	.							T	T	T	S												T	T							G	G	G					T	T		S						S			T	T	T	T										.	.	.
Template Predicted Secondary structure														.	.	.	.																																																														.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.					.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	L	G	K	E	L	D	V	P	V	V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	L	V	S	F	S	G	D	K	L	L	G	G	P	Q	A	G	I	I	V	G	K	K	E	M	I	A	R	L	Q	S	H	P	L	K	R	A	L
Query Conservation
Alig confidence		.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.
Template Conservation		.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.
Template Sequence		.	.	.	.	.	G	P	E	V	V	V	T	A	D	F	S	S	T	I	L	S	A	P	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	R	Y	G	V	I	Y	A	G	A	Q	K	N	I	G	P	A	G	L	T	L	V	I	V	R	E	D	L	L	G	K	A	H	E	S	C	P	S	I	.	.
Template Known Secondary structure		.	.	.	.	.		T	T								T	T	T	T	T	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G		S						T	T	T	T	T			T	T								G	G	G		S				T	T	S		G	G	.	.
Template Predicted Secondary structure		.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.
Template SS confidence
							166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.														.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.			360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure																																					.	.
Query SS confidence																																					.	.
Query Sequence		R	A	D	K	M	T	L	A	A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	.	.	S	A	E	V	I	Q	I	Q	A	Q	R	L	Q	A	P	L	A	A	H	Y	G	A	E	F	A	V	Q	V	M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D
Query Conservation																																					.	.
Alig confidence		.	.	.	.	.	.	.	.	.																											.	.																																									.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																																																																					.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	L	D	Y	T	V	L	N	D	N	P	T	F	A	W	Y	L	S	G	L	V	F	K	W	L	K	A	Q	G	G	V	A	A	M	H	K	I	N	Q	Q	K	A	E	L	L	Y	G	V	I	D	N	S	D	F	Y	R	N	D	V	A	Q	A	N	R	S	R	M	N	V	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	G											S																T																						T		S	S					B		G	G	G	B		S	S			.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																																					.	.	.
Template SS confidence
											226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.		.	.	.	.	.	.	.	.				450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure																																									.									.	.	.
Query SS confidence																																									.									.	.	.
Query Sequence		R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	G	S	H	L	E	S	L	A	A	R	W	R	E	L	P	V	P	V	I	G	R	I	Y	D	.	G	R	L	W	L	D	L	R	.	.	.	C	L	E	D	E	Q	R	F	L	E	M	L
Query Conservation																																									.									.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																															.									.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	P	F	Q	L	A	D	N	T	L	D	K	V	F	L	E	E	S	F	A	A	G	L	H	A	L	K	G	H	R	V	V	G	G	M	R	A	S	I	Y	N	A	M	P	I	E	G	V	K	A	L	T	D	F	M
Template Known Secondary structure		.	.	.	.	.	.	.	.	.					S	S	G	G	G											T	T					B			T	T	T		S							T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions