Job Description P0A821 Confidence 99.84% Date Thu Jan 5 11:06:39 GMT 2012 Rank 156 Aligned Residues 358 % Identity 15% Template c3qguB_ PDB info PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii Resolution 1.55 Å

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		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.					.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.
Query SS confidence																																																							.	.	.	.
Query Sequence		W	A	Q	E	V	D	A	R	L	T	K	E	A	Q	S	A	L	R	P	V	I	N	L	T	G	T	V	L	H	T	N	L	G	R	A	L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	R	S	P	V	.	.	.	.	T	L	E	Y	D	L	D	D	A	G	R	G	H	R	D	R	A	L	A	Q	L	L	C
Query Conservation																																																							.	.	.	.
Alig confidence																										.	.	.	.	.																									.	.	.	.												.
Template Conservation																										.	.	.	.	.																																								.
Template Sequence		F	P	E	I	A	R	R	R	K	A	H	Q	E	K	N	P	D	A	K	I	I	S	L	G	.	.	.	.	.	I	G	D	T	T	E	P	L	P	K	Y	I	A	D	A	M	A	K	A	A	A	G	L	A	T	R	E	G	Y	S	G	Y	G	A	E	Q	G	Q	G	.	A	L	R	E	A	V	A	S	T	F	Y
Template Known Secondary structure																	T	T							S	.	.	.	.	.	S	S																					G	G	G	S						S	S		T	T				.
Template Predicted Secondary structure																										.	.	.	.	.																																								.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.						.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.
		140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.										.	.	.	.	.
Predicted Secondary structure							.	.																																																												.	.	.	.	.	.	.	.	.
Query SS confidence							.	.																																																												.	.	.	.	.	.	.	.	.
Query Sequence		R	I	T	G	A	.	.	E	D	A	C	I	V	N	N	N	A	A	A	V	L	L	M	L	A	A	T	A	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C	T	L	H	E	V	G	T	T	.	.	.	.	.	.	.	.	.	N	R	T	H	A
Query Conservation							.	.																																																												.	.	.	.	.	.	.	.	.
Alig confidence							.	.																																					.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.
Template Sequence		G	H	A	G	R	A	A	D	E	I	F	I	S	D	G	S	K	C	D	I	A	R	I	Q	M	M	F	G	S	K	P	T	V	A	V	Q	D	P	S	Y	P	V	Y	.	.	.	.	.	.	V	D	T	S	V	M	M	G	M	T	G	D	H	N	G	T	G	F	D	G	I	E	Y	M	V	C	N	P	D	N	H
Template Known Secondary structure		T	T	T	T			G	G	G					S															S	S	S							S			T			.	.	.	.	.	.							T	T		S			B		S	S	S	B	T	T								G	G	G	T
Template Predicted Secondary structure																																													.	.	.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.							.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	Y	R	Q	A	V	N	E	N	T	A	L	L	M	K	V	H	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D	V	P	V	V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	L
Query Conservation
Alig confidence																																.																																						.
Template Conservation																																.																																						.
Template Sequence		F	F	P	D	L	S	K	A	K	R	T	D	I	I	F	F	C	S	P	N	N	P	T	G	A	A	A	T	R	A	.	Q	L	T	E	L	V	N	F	A	R	K	N	G	S	I	L	V	Y	D	A	A	Y	A	L	Y	I	S	N	P	D	C	P	K	T	I	Y	E	.	I	P	G	A	D	E	V	A	I	E	T
Template Known Secondary structure		T				T	T	S					S						S	S		T	T	T								.													T								T	T	G	G	G				T	T	S		S	S	G	G	G	.	S	T	T	G	G	G	T
Template Predicted Secondary structure																																.																																						.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		V	S	F	S	G	D	K	L	L	G	G	P	Q	A	G	I	I	V	G	K	K	E	M	I	A	R	L	Q	S	H	P	L	K	R	A	L	R	A	D	K	M	T	L	A	A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	.	L	L	T	R	S	A	E	V	I	Q	I	Q
Query Conservation																																																																					.
Alig confidence																														.	.	.	.	.	.	.	.																																.
Template Conservation																														.	.	.	.	.	.	.	.
Template Sequence		C	S	F	S	K	Y	A	G	F	T	G	V	R	L	G	W	T	V	V	P	K	A	L	K	Y	A	N	G	.	.	.	.	.	.	.	.	E	P	V	H	A	D	W	N	R	V	M	T	T	C	F	N	G	A	S	N	I	V	Q	A	G	G	L	A	C	L	Q	P	E	G	L	K	E	M	N	A	M	I	K	F
Template Known Secondary structure					S	G	G	G	T		T	T										T	T		B		T	T	S	.	.	.	.	.	.	.	.		B												S																T	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.									.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440						.	.
Predicted Secondary structure																																																																											.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.
Query Sequence		A	Q	R	L	Q	A	P	L	A	A	H	Y	G	A	E	F	A	V	Q	V	M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	G	S	H	L	E	S	L	A	A	R	W	R	E	L	P	V	P	V	I	G	R	I	Y	.	.	.	.	.	D	G
Query Conservation																																																																											.	.	.	.	.
Alig confidence																	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.
Template Conservation																	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	K	E	N	A	Q	I	L	K	T	T	F	T	E	M	.	G	F	S	V	Y	G	G	D	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Y	I	W	V	G	F	P	G	K	P	S	W	D	V	F	A	E	I	L	E	R	C	N	I	V	T	T	P	G	S	G	Y	G	P	A	G	E	G
Template Known Secondary structure																T	.	T						S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S							T	T	S																				G	G	G	G		G	G	G	T	T
Template Predicted Secondary structure																	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.		.	.	.	.	.	370	.	.	.	.																.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	W	L	D	L	R	C	L	E	D	E	Q	R	F	L	E	M	L
Query Conservation
Alig confidence										.	.
Template Conservation										.	.
Template Sequence		F	V	R	A	S	A	F	G	.	.	S	R	E	N	I	L	E	A	V
Template Known Secondary structure									S	.	.
Template Predicted Secondary structure										.	.
Template SS confidence
		414	.	.	.	.	.	420	.			.	.	.	.	.	.	.	.	430

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions