Job Description P0A821 Confidence 99.84% Date Thu Jan 5 11:06:39 GMT 2012 Rank 161 Aligned Residues 328 % Identity 12% Template c3ke3A_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative serine-pyruvate aminotransferase; PDBTitle: crystal structure of putative serine-pyruvate aminotransferase2 (yp_263484.1) from psychrobacter arcticum 273-4 at 2.20 a resolution Resolution 2.20 Å

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		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		V	I	N	L	T	G	T	V	L	H	T	N	L	G	R	A	L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	R	S	P	V	T	L	E	Y	D	L	D	D	A	G	R	G	H	R	D	R	A	L	A	Q	L	L	C	R	I	T	G	A	E	D	A	C	I	V	.	N	N	N	A	A	A	V	L	L	M	L
Query Conservation																																																																						.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	I	D	P	N	G	L	L	E	Y	S	V	V	Y	T	D	R	A	L	N	H	X	S	K	A	F	Q	E	V	X	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	L	S	N	L	K	T	V	Y	N	A	E	A	A	V	I	I	P	G	S	G	T	Y	G	X	E	A	V	A
Template Known Secondary structure				S	T	T	S						S	S			T	T	S			T	T	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T		S							S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.																				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.														.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Query Sequence		A	A	T	A	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C	T	L	H	E	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	N	R	T	H	A	N	D	Y	R	Q	A	V	N	E	N	.	T	A	L	L	M	K	V	H	T
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Alig confidence																					.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																					.	.	.	.
Template Sequence		R	Q	L	T	I	D	E	D	C	L	I	I	R	N	G	W	F	S	Y	.	.	.	.	R	W	T	Q	I	L	E	K	G	K	F	A	K	S	S	T	V	L	T	A	E	R	T	E	D	T	E	A	P	K	P	F	A	P	V	D	I	E	T	A	V	A	K	I	K	E	D	K	S	A	I	V	Y	A	P	H	V
Template Known Secondary structure						T	T									S					.	.	.	.												S	S										S	S			S	S																				T		S						S
Template Predicted Secondary structure																					.	.	.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.					.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D	V	P	V	V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	L	V	S	F	S	G	D	K	L	L	G	G	P	Q	A	G	I	I	V	G
Query Conservation
Alig confidence								.																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.																																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	T	S	S	G	I	.	I	L	S	E	E	Y	I	K	A	L	S	E	A	V	H	S	V	G	G	L	L	V	I	D	C	I	A	S	G	C	V	.	.	.	.	.	.	.	.	.	.	.	.	W	L	D	X	K	E	L	G	I	D	V	L	I	S	A	P	Q	G	W	S	S	T	P	C	A	G	L	V	X	L
Template Known Secondary structure			T	T	T	T		.																	T	T								T	T		T	T		.	.	.	.	.	.	.	.	.	.	.	.								T		S											S
Template Predicted Secondary structure								.																																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		144	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180													.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.								.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure																																								.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.
Query Sequence		K	K	E	M	I	A	R	L	Q	S	H	P	L	K	R	A	L	R	A	D	K	M	T	L	A	A	L	E	A	T	L	R	L	Y	L	H	P	E	.	.	.	.	.	.	.	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q	A	Q	R	L	Q	A	P	L	A	A	H	Y	G
Query Conservation																																								.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	A	A	A	I	K	K	V	E	S	T	E	S	N	C	F	S	L	D	L	K	Q	W	L	T	I	X	R	A	Y	E	N	G	G	H	A	Y	H	A	T	X	P	T	D	S	L	R	Q	F	R	D	A	I	L	E	A	K	E	I	G	F	D	I	L	R	D	A	Q	W	E	L	G	N	R	V	R	K	V	L	T
Template Known Secondary structure											T				S		S	T	T														T	T	S				S	S
Template Predicted Secondary structure
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.									.	.	.	440	.	.	.	.	.	.	.	.				.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.													.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.													.	.	.
Query Sequence		A	E	F	A	V	Q	V	M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	G	S	H	L	E	S	L	A	A	R	W	R	E	L	P	V	P	V	I	.	.	.	.	.	.	.	.	G	R	I	Y	D	G	R	L	W	L	D	L	.	.	.	R
Query Conservation																																																										.	.	.	.	.	.	.	.													.	.	.
Alig confidence				.															.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.													.	.	.
Template Conservation				.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	K	.	G	I	E	S	V	A	A	E	G	F	E	A	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	V	S	Y	T	E	R	D	D	X	H	K	G	S	A	F	A	E	A	G	L	Q	I	A	A	G	V	P	L	K	V	G	E	P	D	N	F	K	T	F	R	L	G	L	F	G	L	D
Template Known Secondary structure			T	.	T			B	S	B		T	T		B		S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S						S	S						T	T										S	S				T	T										S
Template Predicted Secondary structure				.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		292	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.															.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
		450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	L	E	D	E	Q	R	F	L	E	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	T	D	I	D	G	T	V	E	R	F
Template Known Secondary structure				T
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions