Job Description P0A821 Confidence 99.94% Date Thu Jan 5 11:06:39 GMT 2012 Rank 42 Aligned Residues 365 % Identity 15% Template c3hbxB_ PDB info PDB header:lyase Chain: B: PDB Molecule:glutamate decarboxylase 1; PDBTitle: crystal structure of gad1 from arabidopsis thaliana Resolution 2.67 Å

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	L	P	A	W	C	E	N	W	A	Q	E	V	D	A	R	L	T	K	E	A	Q	S	A	L	R	P	V	I	N	L	T	G	T	V	L	H	T	N	L	G	R	A	L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	R	S	P	V	T	L	E	Y	D	L	D	D	A	G	R	G	H	R	D	R	A	L
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.																											.
Template Sequence		P	E	N	S	I	P	K	E	A	A	Y	Q	I	I	N	D	E	L	M	L	D	G	N	P	R	L	N	L	A	S	F	V	T	T	W	M	.	.	.	.	.	.	.	.	.	.	.	E	P	E	C	D	K	L	I	M	S	S	I	N	K	N	Y	V	D	M	D	E	Y	P	V	T	T	.	E	L	Q	N	R	C
Template Known Secondary structure			S	S															G	G	G	S			G	G	G	B	T	T			S					.	.	.	.	.	.	.	.	.	.	.											T	T	T		B	T	T		T	T	T						.
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.																											.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.												.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100
		135	.	.	.	.	140	.	.	.	.	.	.	.								.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.															.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Q	L	L	C	R	I	T	G	A	E	D	A	.	.	.	.	.	.	.	C	I	V	N	N	N	A	A	A	V	L	L	M	L	A	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A
Query Conservation															.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.
Template Sequence		V	N	M	I	A	H	L	F	N	A	P	L	E	E	A	E	T	A	V	G	V	G	T	V	G	S	S	E	A	I	M	L	A	G	L	A	F	K	R	K	W	Q	N	K	R	K	A	E	G	K	P	V	D	K	P	N	I	V	T	G	A	N	V	Q	V	C	W	.	.	.	.	.	.	E	K	F	A	R	Y	F
Template Known Secondary structure									T	T					T	T									S	S																							T	T				S								T	T						.	.	.	.	.	.							T
Template Predicted Secondary structure																																																																					.	.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.							.	.	170	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.				.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.							.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure													.	.	.																																																	.	.	.	.	.	.
Query SS confidence													.	.	.																																																	.	.	.	.	.	.
Query Sequence		G	C	T	L	H	E	V	G	T	T	N	.	.	.	R	T	H	A	N	D	Y	R	Q	A	V	N	E	N	T	A	L	L	M	K	V	H	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D	.	.	.	.	.	.	V	P	V	V	T	D	L	G	S	G	S	L
Query Conservation													.	.	.																																																	.	.	.	.	.	.
Alig confidence													.	.	.																														.	.	.	.																.	.	.	.	.	.
Template Conservation																																													.	.	.	.
Template Sequence		E	V	E	L	K	E	V	K	L	S	E	G	Y	Y	V	M	D	P	Q	Q	A	V	D	M	V	D	E	N	T	I	C	V	A	A	I	L	G	S	T	L	N	G	E	.	.	.	.	F	E	D	V	K	L	L	N	D	L	L	V	E	K	N	K	E	T	G	W	D	T	P	I	H	V	D	A	A	S	G	G	F
Template Known Secondary structure		T									B	T	T	B		S												T	T								B	S		T	T	T			.	.	.	.	B																												T	T	G	G	G
Template Predicted Secondary structure																																													.	.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.					.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	L	V	S	F	S	G	D	K	L	L	G	G	P	Q	A	G	I	I	V	G	K	K	E	M	I	A	R	L	Q	S	H	P	L	K	R	A	L	R	A	D	K	M	T	L	A	A	L	E	A	T	L	R	L	Y	L	H	P
Query Conservation
Alig confidence											.	.	.	.
Template Conservation											.	.	.	.
Template Sequence		I	A	P	F	L	Y	P	E	L	.	.	.	.	E	W	D	F	R	L	P	L	V	K	S	I	N	V	S	G	H	Y	G	L	V	Y	A	G	I	G	W	V	I	W	R	N	K	E	D	L	P	E	E	L	I	F	H	I	N	Y	L	G	A	D	Q	P	T	F	T	L	N	F	S	K	G	S	S	Q	V	I	A
Template Known Secondary structure		T						S	S		.	.	.	.			S	T	T	S	T	T															S	S							S	S	G	G	G	S		G	G	G						S	S	S	S							S			S		B	S
Template Predicted Secondary structure											.	.	.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.					260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q	A	Q	R	L	Q	A	P	L	A	A	H	Y	G	A	E	F	A	V	Q	V	M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	G	S	H	L	E	S	L
Query Conservation
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	Y	Y	Q	L	I	R	L	G	H	E	G	Y	R	N	V	M	E	N	C	R	E	N	M	I	V	L	R	E	G	L	E	K	T	E	R	F	N	I	V	S	K	D	E	G	V	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	F	S	L	K	D	S	S	C	H	T	E	F	E	I
Template Known Secondary structure																																		T	T	T						S		S	S	S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S		S	S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.																	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.							440	.	.	.	.	.	.	.	.	.				450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure																	.	.	.	.	.	.											.	.	.
Query SS confidence																	.	.	.	.	.	.											.	.	.
Query Sequence		A	A	R	W	R	E	L	P	V	P	V	I	G	R	I	.	.	.	.	.	.	Y	D	G	R	L	W	L	D	L	R	.	.	.	C	L	E	D	E	Q	R	F	L	E	M	L
Query Conservation																	.	.	.	.	.	.											.	.	.
Alig confidence																	.	.	.	.	.	.											.	.	.
Template Conservation
Template Sequence		S	D	M	L	R	R	Y	G	W	I	V	P	A	Y	T	M	P	P	N	A	Q	H	I	T	V	L	R	V	V	I	R	E	D	F	S	R	T	L	A	E	R	L	V	I	D	I
Template Known Secondary structure							T	T	T		B								T	T		T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.