Job Description P0A821 Confidence 99.90% Date Thu Jan 5 11:06:39 GMT 2012 Rank 97 Aligned Residues 330 % Identity 15% Template c3h14A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase, classes i and ii; PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi Resolution 1.90 Å

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		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		E	V	D	A	R	L	T	K	E	A	Q	S	A	L	R	P	V	I	N	L	T	G	T	V	L	H	T	N	L	G	R	A	L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	R	S	P	V	T	L	E	Y	D	L	D	D	A	G	R	G	H	R	D	R	A	L	A	Q	L	L	C	R	I	T	G	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence															.								.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.														.	.	.
Template Conservation															.								.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	V	X	E	A	A	R	R	A	E	E	A	G	.	R	R	I	I	H	X	E	.	.	.	.	.	V	G	Q	P	G	T	G	A	P	R	G	A	V	E	A	L	A	K	S	L	E	G	L	P	A	L	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	R	I	A	R	L	Y	G	E	W	Y	G	V	D	L
Template Known Secondary structure													T	T	.								.	.	.	.	.		S	S		S	S		S																			.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.								.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.						.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.													.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
			144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure		.																							.																																							.
Query SS confidence		.																							.																																							.
Query Sequence		.	A	E	D	A	C	I	V	N	N	N	A	A	A	V	L	L	M	L	A	A	T	A	.	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C	T	L	H	E	V	G	T	T	.	N	R	T	H	A	N	D	Y	R	Q	A	V	N	E	N	T	A
Query Conservation		.																							.																																							.
Alig confidence		.																							.																.	.	.	.	.	.																		.
Template Conservation																																									.	.	.	.	.	.
Template Sequence		D	P	G	R	V	V	I	T	P	G	S	S	G	G	F	L	L	A	F	T	A	L	F	D	S	G	D	R	V	G	I	G	A	P	G	Y	P	S	Y	.	.	.	.	.	.	R	Q	I	L	R	A	L	G	L	V	P	V	D	L	P	T	A	P	E	N	R	L	Q	P	V	P	A	D	F	A	G	L	D	L	A
Template Known Secondary structure			G	G	G					S	S															T	T								S						.	.	.	.	.	.							T	T										G	G	G	T	T	S							T	T	S			S
Template Predicted Secondary structure																																									.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.							.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	M	K	V	H	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D	V	P	V	V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	L	V	S	F	S	G	D	K	L	L	G	G	P
Query Conservation
Alig confidence																				.																																.	.	.	.	.	.	.
Template Conservation																				.																																.	.	.	.	.	.	.
Template Sequence		G	L	X	V	A	S	P	A	N	P	T	G	T	X	L	D	H	A	.	A	X	G	A	L	I	E	A	A	Q	A	Q	G	A	S	F	I	S	D	E	I	Y	H	G	I	E	Y	E	A	K	A	.	.	.	.	.	.	.	V	T	A	L	E	L	T	D	E	C	Y	V	I	N	S	F	S	K	Y	F	S	X	T
Template Known Secondary structure							S	S		T	T	T								.												T	T								T	T	T	T		B	S	S	S			.	.	.	.	.	.	.			G	G	G	T		S	S	S						S	S	S	T	T			T
Template Predicted Secondary structure																				.																																.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.								.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		301			.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		Q	.	.	A	G	I	I	V	G	K	K	E	M	I	A	R	L	Q	S	H	P	L	K	R	A	L	R	A	D	K	M	T	L	A	A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q	A	Q	R	L	Q	A	P	L	A	A	H
Query Conservation			.	.
Alig confidence			.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	W	R	V	G	W	X	V	V	P	E	D	Q	V	R	V	V	E	R	I	A	Q	N	X	F	I	C	A	P	H	A	S	Q	V	A	A	L	A	A	L	D	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	E	L	Q	A	N	L	D	V	Y	K	A	N	R	K	L	X	L	E	R
Template Known Secondary structure		T	S									G	G	G											T	T															T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.																		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.		.	430	.	.	.	.	.	.	.	.	.	440							.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure																																																				.													.	.	.	.	.	.
Query SS confidence																																																				.													.	.	.	.	.	.
Query Sequence		Y	G	A	E	F	A	V	Q	V	M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	G	S	H	L	E	S	L	A	A	R	W	.	R	E	L	P	V	P	V	I	G	R	I	Y	.	.	.	.	.	.	D	G	R	L	W	L	D	L	R	C	L
Query Conservation																																																				.													.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.													.	.	.	.	.	.											.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.
Template Sequence		L	P	K	A	G	F	T	R	I	A	P	P	D	G	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	V	Y	A	D	V	S	D	L	T	D	D	S	R	A	F	A	A	E	I	L	E	K	A	G	V	A	V	T	P	G	L	D	F	D	P	E	R	G	A	G	T	L	R	F	S	Y	A	R	.
Template Known Secondary structure						T				B					B	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	T		S																				G	G	G	T		T	T	T	G	G	G								S	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.															.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
		452	.	.	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	E	Q	R	F	L	E	M	L
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	A	T	A	D	I	E	E	G	L
Template Known Secondary structure		.
Template Predicted Secondary structure		.
Template SS confidence
			364	.	.	.	.	.	370	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions