Phyre 2 alignment of P0A821 with c3g0tA

Job Description P0A821
Confidence 99.87% Date Thu Jan 5 11:06:39 GMT 2012

Rank 127 Aligned Residues 312

% Identity 13% Template c3g0tA_

PDB info PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution

Resolution 1.75 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	E	A	R	E	V	I	R	G	S	Q	T	L	P	A	W	C	E	N	W	A	Q	E	V	D	A	R	L	T	K	E	A	Q	S	A	L	R	P	V	I	N	L	T	G	T	V	L	H	T	N	L	G	R	A	L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	R	S	P	V	T	L	E	Y	D	L	D	D
Query Conservation
Alig confidence																																												.	.	.	.	.
Template Conservation																																												.	.	.	.	.
Template Sequence	E	K	L	I	R	E	K	Q	N	E	L	H	I	K	D	L	G	X	A	S	I	R	D	L	V	A	L	V	T	N	L	E	K	A	T	G	T	K	F	C	R	X	E	.	.	.	.	.	X	G	V	P	G	L	P	A	P	Q	I	G	I	E	T	E	I	Q	K	L	R	E	G	V	A	S	I	Y	P	N	L	D
Template Known Secondary structure												T		S		G	G	G																		T								.	.	.	.	.			S			S																	T	G	G	G	S				T	T
Template Predicted Secondary structure																																												.	.	.	.	.
Template SS confidence
	7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.						50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.

	125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.					.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.						170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.																										.	.	.	.	.
Query SS confidence																					.	.	.	.																										.	.	.	.	.
Query Sequence	A	G	R	G	H	R	D	R	A	L	A	Q	L	L	C	R	I	T	G	A	.	.	.	.	E	D	A	C	I	V	N	N	N	A	A	A	V	L	L	M	L	A	A	T	A	S	G	K	E	.	.	.	.	.	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C
Query Conservation																					.	.	.	.																										.	.	.	.	.
Alig confidence				.																	.	.	.	.																										.	.	.	.	.												.	.	.	.	.	.
Template Conservation				.																																																														.	.	.	.	.	.
Template Sequence	G	L	P	.	E	L	K	Q	E	A	S	R	F	A	K	L	F	V	N	I	D	I	P	A	R	A	C	V	P	T	V	G	S	X	Q	G	C	F	V	S	F	L	V	A	N	R	T	H	K	N	R	E	Y	G	T	L	F	I	D	P	G	F	N	L	N	.	.	.	.	.	.	K	L	Q	C	R	I	L	G	Q
Template Known Secondary structure				.																				G	G	G					S														T	T	S		T	T		S								S						.	.	.	.	.	.								T
Template Predicted Secondary structure				.																																																														.	.	.	.	.	.
Template SS confidence
	82	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.							.	.	.	.	150	.	.	.	.

	196	.	.	.	200	.	.	.	.					.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure										.	.	.	.
Query SS confidence										.	.	.	.
Query Sequence	T	L	H	E	V	G	T	T	N	.	.	.	.	R	T	H	A	N	D	Y	R	Q	A	V	N	E	N	T	A	L	L	M	K	V	H	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D	V	P	V	V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G
Query Conservation										.	.	.	.
Alig confidence										.	.	.	.																																			.
Template Conservation																																																.
Template Sequence	K	F	E	S	F	D	L	F	E	Y	R	G	E	K	L	R	E	K	L	E	S	Y	L	Q	T	G	Q	F	C	S	I	I	Y	S	N	P	N	N	P	T	W	Q	C	X	T	D	E	.	E	L	R	I	I	G	E	L	A	T	K	H	D	V	I	V	I	E	D	L	A	Y	F	G	X	D	F	R	K	D	Y	S
Template Known Secondary structure							G	G	G	G		T	T											T	T	T									S	S		T	T	T								.												T	T								T	T	T	T			T	T	S
Template Predicted Secondary structure																																																.
Template SS confidence
	155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.

	272	.	.	.	.	.	.				.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.																			.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure								.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	L	P	K	E	P	M	P	.	.	.	Q	E	L	I	A	A	G	V	S	L	V	S	F	S	G	D	K	L	L	G	G	P	Q	A	G	I	I	V	G	K	K	E	M	I	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	S	H	P	L	K	R	A	L	R	A	D	K	M	T
Query Conservation								.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	H	P	G	E	P	L	Y	Q	P	S	V	A	N	Y	T	D	N	Y	I	L	A	L	S	S	S	A	F	S	Y	A	G	Q	R	I	G	V	L	X	I	S	G	K	L	Y	E	R	E	Y	P	D	L	E	E	S	F	G	R	L	R	F	G	E	A	L	S	S	S	A	L	Y	A	L	S	S	G	A	T	H	S	A
Template Known Secondary structure	S	T	T	S	S						G	G	G	T		S												S		G	G	G															B		G	G	G					S		S	B							T	T							S	S	S
Template Predicted Secondary structure
Template SS confidence
	234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

	331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	A	A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q	A	Q	R	L	Q	A	P	L	A	A	H
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.
Template Sequence	Q	W	G	X	A	A	X	L	K	A	C	N	D	G	E	.	.	.	.	.	.	.	.	.	Y	N	F	R	D	S	V	I	E	Y	G	R	K	A	R	I	X	K	K	X	F	L	D	N
Template Known Secondary structure													T	T	S	.	.	.	.	.	.	.	.	.																							T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.
Template SS confidence
	315	.	.	.	.	320	.	.	.	.	.	.	.	.	.										330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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