Job Description P0A821 Confidence 99.88% Date Thu Jan 5 11:06:39 GMT 2012 Rank 111 Aligned Residues 364 % Identity 14% Template c3f9tB_ PDB info PDB header:lyase Chain: B: PDB Molecule:l-tyrosine decarboxylase mfna; PDBTitle: crystal structure of l-tyrosine decarboxylase mfna (ec 4.1.1.25)2 (np_247014.1) from methanococcus jannaschii at 2.11 a resolution Resolution 2.11 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	Q	T	L	P	A	W	C	E	N	W	A	Q	E	V	D	A	R	L	T	K	E	A	Q	S	A	L	R	P	V	I	N	L	T	G	T	V	L	H	T	N	L	G	R	A	L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	R	S	P	V	T	L	E	Y	D	L	D	D	A	G	R	G	H	R	D	R
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.	.	.												.															.
Template Conservation																																										.	.	.	.	.	.	.	.	.												.															.
Template Sequence		N	X	Q	E	K	G	V	S	E	K	E	I	L	E	E	L	K	K	Y	R	S	L	D	L	K	Y	E	D	G	N	I	F	G	S	X	C	S	N	V	L	.	.	.	.	.	.	.	.	.	P	I	T	R	K	I	V	D	I	F	L	.	E	T	N	L	G	D	P	G	L	F	K	G	T	K	.	L	L	E	E
Template Known Secondary structure					S	S																T	T	S			G	G	G	S		B		S		S						.	.	.	.	.	.	.	.	.	T										T	.	T			T	T	S	G	G	G						.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.												.															.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.										.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.															.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	A	Q	L	L	C	R	I	T	G	A	E	D	A	.	.	C	I	V	N	N	N	A	A	A	V	L	L	M	L	A	A	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C	T
Query Conservation																	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.
Template Sequence		K	A	V	A	L	L	G	S	L	L	N	N	K	D	A	Y	G	H	I	V	S	G	G	T	E	A	N	L	X	A	L	R	C	I	K	N	I	W	R	E	K	R	R	K	G	L	S	K	N	E	H	P	K	I	I	V	P	I	T	A	H	F	S	F	.	.	.	.	.	.	E	K	G	R	E	X	X	D	L	E
Template Known Secondary structure											T	T		T	T							S																							T	T					S	S							T	T			T			.	.	.	.	.	.								T
Template Predicted Secondary structure																																																																		.	.	.	.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.							.	.	.	.	140	.	.	.	.	.
		197	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.
Predicted Secondary structure										.	.																																																															.	.
Query SS confidence										.	.																																																															.	.
Query Sequence		L	H	E	V	G	T	T	N	.	.	R	T	H	A	N	D	Y	R	Q	A	V	N	E	N	T	A	L	L	M	K	V	H	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D	V	P	V	V	T	D	L	G	S	G	S	L	V	D	.	.	L	S	Q	Y	G	L
Query Conservation										.	.																																																															.	.
Alig confidence										.	.																												.	.	.																																	.	.
Template Conservation																																							.	.	.
Template Sequence		Y	I	Y	A	P	I	K	E	D	Y	T	I	D	E	K	F	V	K	D	A	V	E	D	Y	D	V	D	G	I	I	G	I	A	G	T	T	E	.	.	.	L	G	T	I	D	N	I	E	E	L	S	K	I	A	K	E	N	N	I	Y	I	H	V	D	A	A	F	G	G	L	V	I	P	F	L	D	D	K	Y	K
Template Known Secondary structure							B		T	T	S	S	B												S									B	S		T	T	.	.	.	T			B														T								T	T	G	G	G	T	G	G	G			G	G	G
Template Predicted Secondary structure																																							.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	L	V	S	F	S	G	D	K	L	L	G	G	P	.	Q	A	G	I	I	V	G	K	K	E	M	I	A	R	L	Q	S	H	P	L	K	R	A	L	R	A	D	K	M	T	L	A	A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L
Query Conservation																														.
Alig confidence																														.																																									.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.
Template Sequence		K	K	G	V	N	Y	K	F	D	F	S	L	G	V	D	S	I	T	I	D	P	H	K	X	G	H	C	P	I	P	S	G	G	I	L	F	K	D	I	G	Y	K	R	Y	L	D	V	D	A	P	Y	L	T	E	T	R	Q	A	T	I	L	G	T	R	V	G	F	G	G	.	.	.	.	.	.	A	C	T	Y	A
Template Known Secondary structure			T	T						S	G	G	G	T		S						T	T	T	T	T				S	S							S	S	G	G	G	G	G	G	T					T	T	S	S	S	S				S	S		S	S			S				.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.							.	.	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q	A	Q	R	L	Q	A	P	L	A	A	H	Y	G	A	E	F	A	V	Q	V	M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	G	S	H	L	E	S	L	A	A	R	W	R	E	L
Query Conservation
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.
Template Sequence		V	L	R	Y	L	G	R	E	G	Q	R	K	I	V	N	E	C	X	E	N	T	L	Y	L	Y	K	K	L	K	E	N	N	F	K	P	V	I	E	P	I	L	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	I	E	.	.	.	.	.	D	E	D	Y	K	E	V	C	K	K	L	R	D	R
Template Known Secondary structure																																T	T			B	S	S			S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.		T	T											T
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.															340	.	.	.						.	.	.	.	.	.	350	.	.	.	.	.	.	.
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.				450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure																				.	.	.
Query SS confidence																				.	.	.
Query Sequence		P	V	P	V	I	G	R	I	Y	D	G	R	L	W	L	D	L	R	.	.	.	C	L	E	D	E	Q	R	F	L	E	M	L
Query Conservation																				.	.	.
Alig confidence																				.	.	.
Template Conservation
Template Sequence		G	I	Y	V	S	V	C	N	C	V	K	A	L	R	I	V	V	X	P	H	I	K	R	E	H	I	D	N	F	I	E	I	L
Template Known Secondary structure		T		B					S	S	S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions