Job Description P0A821 Confidence 99.83% Date Thu Jan 5 11:06:39 GMT 2012 Rank 179 Aligned Residues 348 % Identity 12% Template c3eleB_ PDB info PDB header:transferase Chain: B: PDB Molecule:amino transferase; PDBTitle: crystal structure of amino transferase (rer070207001803) from2 eubacterium rectale at 2.10 a resolution Resolution 2.10 Å

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		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																																																										.	.	.
Query SS confidence																																																										.	.	.
Query Sequence		W	A	Q	E	V	D	A	R	L	T	K	E	A	Q	S	A	L	R	P	V	I	N	L	T	G	T	V	L	H	T	N	L	G	R	A	L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	R	S	P	V	T	L	E	.	.	.	Y	D	L	D	D	A	G	R	G	H	R	D	R	A	L	A	Q	L	L	C	R
Query Conservation																																																										.	.	.
Alig confidence																										.	.	.	.	.																												.	.	.									.
Template Conservation																										.	.	.	.	.																																							.
Template Sequence		I	R	E	L	F	E	Y	G	K	K	R	A	A	I	V	G	K	E	N	V	Y	D	F	S	.	.	.	.	.	I	G	N	P	S	I	P	A	P	Q	I	V	N	D	T	I	K	E	L	V	T	D	Y	D	S	V	A	L	H	G	Y	T	S	A	Q	G	D	V	.	E	T	R	A	A	I	A	E	F	L	N	N
Template Known Secondary structure																		G	G	G						.	.	.	.	.						S																	S							S				T	T				.
Template Predicted Secondary structure																										.	.	.	.	.																																							.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40						.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90
		141	.	.	.					.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.				.	.	.	.	.	210	.
Predicted Secondary structure						.	.	.	.																						.	.																																								.	.	.
Query SS confidence						.	.	.	.																						.	.																																								.	.	.
Query Sequence		I	T	G	A	.	.	.	.	E	D	A	C	I	V	N	N	N	A	A	A	V	L	L	M	L	A	A	T	A	.	.	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C	T	L	H	E	V	G	T	T	N	.	.	.	R	T	H	A	N	D	Y
Query Conservation						.	.	.	.																						.	.																																								.	.	.
Alig confidence						.	.	.	.																						.	.																.	.	.	.	.	.																			.	.	.
Template Conservation																																																.	.	.	.	.	.
Template Sequence		T	H	G	T	H	F	N	A	D	N	L	Y	X	T	X	G	A	A	A	S	L	S	I	C	F	R	A	L	T	S	D	A	Y	D	E	F	I	T	I	A	P	Y	F	P	E	Y	.	.	.	.	.	.	K	V	F	V	N	A	A	G	A	R	L	V	E	V	P	A	D	T	E	H	F	Q	I	D	F	D	A	L
Template Known Secondary structure									G	G	G					S	S															S	T	T							S	S			T	T		.	.	.	.	.	.							T	T										T	T	T	S	S
Template Predicted Secondary structure																																																.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.							.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.							.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.
Query Sequence		R	Q	A	V	N	E	N	T	A	L	L	M	K	V	H	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D	.	.	.	.	.	.	V	P	V	V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G
Query Conservation																																											.	.	.	.	.	.
Alig confidence																													.														.	.	.	.	.	.																						.	.	.	.
Template Conservation																													.																																									.	.	.	.
Template Sequence		E	E	R	I	N	A	H	T	R	G	V	I	I	N	S	P	N	N	P	S	G	T	V	Y	S	E	E	.	T	I	K	K	L	S	D	L	L	E	K	K	S	K	E	I	G	R	P	I	F	I	I	A	D	E	P	Y	R	E	I	V	Y	D	G	I	K	V	P	F	.	.	.	.	V	T	K	Y	Y	D	N	T
Template Known Secondary structure				T			T	T								S	S		T	T	T								.																	T	S									T	T	T	T		B		T	T						.	.	.	.	G	G	G	T		S	S
Template Predicted Secondary structure																													.																																									.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.					.	.	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	L	V	S	F	S	G	D	K	L	L	G	G	P	Q	A	G	I	I	V	G	K	K	E	M	I	A	R	L	Q	S	H	P	L	K	R	A	L	R	A	D	K	M	T	L	A	A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	C	Y	S	Y	S	K	S	L	S	L	P	G	E	R	I	G	Y	V	L	V	P	D	E	V	Y	D	K	A	E	L	.	.	.	.	.	.	.	.	.	.	Y	A	A	V	C	G	A	G	R	A	L	G	Y	V	C	A	P	S	L	F	Q	K	X	I	V	K	C	Q	G	A	T	G	D	I	N	A	Y	K
Template Known Secondary structure							S	T	T	T	S	S		G	G	G									T	T	S	T	T					.	.	.	.	.	.	.	.	.	.											T	T				S									T	T		T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.											.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.				440	.	.
Predicted Secondary structure																																																																												.	.	.
Query SS confidence																																																																												.	.	.
Query Sequence		I	Q	A	Q	R	L	Q	A	P	L	A	A	H	Y	G	A	E	F	A	V	Q	V	M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	G	S	H	L	E	S	L	A	A	R	W	R	E	L	P	V	P	V	I	G	R	I	.	.	.	Y	D	G
Query Conservation																																																																												.	.	.
Alig confidence															.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Template Conservation															.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	N	R	D	L	L	Y	E	G	L	T	R	I	.	.	.	.	.	G	Y	H	C	F	K	P	D	G	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	X	F	V	K	A	L	E	D	D	S	N	A	F	C	E	K	A	K	E	E	D	V	L	I	V	A	A	D	G	F	G	C	P	G
Template Known Secondary structure															.	.	.	.	.	T							S	B	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S	S												T	T						G	G	G	G	T		T	T
Template Predicted Secondary structure															.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.						.	.	.	.	.	.	.	330	.	.	.																	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	W	L	D	L	R	C	L	E	D	E	Q	R	F	L	E	M	L
Query Conservation
Alig confidence										.	.
Template Conservation										.	.
Template Sequence		W	V	R	I	S	Y	C	V	.	.	D	R	E	X	I	K	H	S	X
Template Known Secondary structure									S	.	.
Template Predicted Secondary structure										.	.
Template SS confidence
		369	370	.	.	.	.	.	.			.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions