Job Description P0A821 Confidence 99.86% Date Thu Jan 5 11:06:39 GMT 2012 Rank 144 Aligned Residues 352 % Identity 10% Template c3dzzB_ PDB info PDB header:transferase Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase; PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution Resolution 1.61 Å

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.					.	.	.	.	.
Predicted Secondary structure																								.																																																	.	.	.	.
Query SS confidence																								.																																																	.	.	.	.
Query Sequence		L	T	K	E	A	Q	S	A	L	R	P	V	I	N	L	T	G	T	V	L	H	T	.	N	L	G	R	A	L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	R	S	P	V	T	L	E	Y	D	L	D	D	A	G	R	G	H	R	D	R	A	L	A	Q	L	L	C	R	I	.	.	.	.	T	G	A	E	D
Query Conservation																								.																																																	.	.	.	.
Alig confidence																								.																						.						.	.	.																			.	.	.	.
Template Conservation																																														.						.	.	.
Template Sequence		V	P	K	R	Q	G	N	S	I	K	W	G	V	L	K	E	K	E	L	P	X	W	I	A	E	X	D	F	K	I	A	P	E	I	X	A	S	X	E	E	K	L	K	V	.	A	A	F	G	Y	.	.	.	E	S	V	P	A	E	Y	Y	K	A	V	A	D	W	E	E	I	E	H	R	A	R	P	K	E	D	W
Template Known Secondary structure							T	T		T	T	T	T	T			T	T						S	S			S	S															T	T	.						.	.	.																				S					G	G	G
Template Predicted Secondary structure																																														.						.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.						.	.	.	.	210	.	.	.	.	.	.	.		.	.
Predicted Secondary structure																					.																																									.	.	.	.	.													.
Query SS confidence																					.																																									.	.	.	.	.													.
Query Sequence		A	C	I	V	N	N	N	A	A	A	V	L	L	M	L	A	A	T	A	.	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C	T	L	H	E	V	G	T	T	N	R	.	.	.	.	.	T	H	A	N	D	Y	R	Q	A	V	N	E	.	N	T
Query Conservation																					.																																									.	.	.	.	.													.
Alig confidence																					.																.	.	.	.	.	.																				.	.	.	.	.													.
Template Conservation																																					.	.	.	.	.	.
Template Sequence		C	V	F	A	S	G	V	V	P	A	I	S	A	X	V	R	Q	F	T	S	P	G	D	Q	I	L	V	Q	E	P	V	Y	N	X	F	.	.	.	.	.	.	Y	S	V	I	E	G	N	G	R	R	V	I	S	S	D	L	I	Y	E	N	S	K	Y	S	V	N	W	A	D	L	E	E	K	L	A	T	P	S	V
Template Known Secondary structure						S														S		T	T							S	S			T			.	.	.	.	.	.						T	T	T												T	T														T	S	T	T
Template Predicted Secondary structure																																					.	.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.							.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	L	M	K	V	H	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D	V	P	V	V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	L	V	S	F	S	G	D	K	L	L	G	G
Query Conservation
Alig confidence																					.																																														.
Template Conservation																					.																																														.
Template Sequence		R	X	X	V	F	C	N	P	H	N	P	I	G	Y	A	W	S	E	E	.	E	V	K	R	I	A	E	L	C	A	K	H	Q	V	L	L	I	S	D	E	I	H	G	D	L	V	L	T	D	E	D	I	T	P	A	F	T	V	D	W	D	A	K	N	W	.	V	V	S	L	I	S	P	S	T	F	N	L	A	A
Template Known Secondary structure								S	S	B	T	T	T	T	B						.												T	T								T	T	G	G	G	B		S	S						G	G	G	S		T	T	G	G	G	G	.											S		G	G
Template Predicted Secondary structure																					.																																														.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	A	G	I	I	V	G	K	K	E	M	I	A	R	L	Q	S	H	P	L	K	R	A	L	R	A	D	K	M	T	L	A	A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q	A	Q	R	L	Q	A	P	L	A	A	H	Y
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	H	A	A	C	A	I	I	P	N	P	D	L	R	A	R	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	F	F	L	A	G	I	G	E	P	N	L	L	A	I	P	A	A	I	A	A	Y	E	E	G	H	D	W	L	R	E	L	K	Q	V	L	R	D	N	F	A	Y	A	R	E	F	L
Template Known Secondary structure		G									S									.	.	.	.	.	.	.	.	.	.	.	.	.	.							T		S	S			T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.															.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		380	.		.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.		.	430	.	.	.	.	.	.	.	.	.	440						.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure				.																																																.													.	.	.	.	.
Query SS confidence				.																																																.													.	.	.	.	.
Query Sequence		G	A	.	E	F	A	V	Q	V	M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	G	S	H	L	E	S	L	A	A	R	W	.	R	E	L	P	V	P	V	I	G	R	I	Y	.	.	.	.	.	D	G	R	L	W	L	D	L	R	C	L	E
Query Conservation				.																																																.													.	.	.	.	.
Alig confidence				.														.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.													.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	K	E	V	P	E	V	K	V	L	D	S	N	A	S	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	W	V	D	I	S	A	L	G	X	N	A	E	D	F	C	K	Y	L	R	E	K	T	G	L	I	I	S	A	G	N	G	Y	R	G	N	G	H	E	F	V	R	I	N	L	A	C	P	K
Template Known Secondary structure						T	T	S						S	B	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.							G	G	G		S																				G	G	G	G		T	T	G	G	G								S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.															.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		453	.						.	.	.	.	.	460	.	.	.
Predicted Secondary structure				.	.	.	.	.
Query SS confidence				.	.	.	.	.
Query Sequence		D	E	.	.	.	.	.	Q	R	F	L	E	M	L	L	K
Query Conservation				.	.	.	.	.
Alig confidence				.	.	.	.	.
Template Conservation
Template Sequence		E	L	V	I	D	G	X	Q	R	L	K	Q	G	V	L	N
Template Known Secondary structure																	T
Template Predicted Secondary structure
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions