Phyre 2 alignment of P0A821 with c3dc1A

Job Description P0A821
Confidence 99.89% Date Thu Jan 5 11:06:39 GMT 2012

Rank 108 Aligned Residues 309

% Identity 15% Template c3dc1A_

PDB info PDB header:transferase Chain: A: PDB Molecule:kynurenine/alpha-aminoadipate aminotransferase PDBTitle: crystal structure of kynurenine aminotransferase ii complex with2 alpha-ketoglutarate

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140												.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence	L	E	Y	D	L	D	D	A	G	R	G	H	R	D	R	A	L	A	Q	L	L	C	R	.	.	.	.	.	.	.	.	.	.	.	I	T	G	A	E	D	A	C	I	V	N	N	N	A	A	A	V	L	L	M	L	A	A	T	A	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.													.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.
Template Conservation											.																																																								.	.	.	.	.
Template Sequence	L	Q	Y	S	P	S	A	G	I	P	.	E	L	L	S	W	L	K	Q	L	Q	I	K	L	H	N	P	P	T	I	H	Y	P	P	S	Q	G	Q	M	D	L	C	V	T	S	G	S	Q	Q	G	L	C	K	V	F	E	M	I	I	N	P	G	D	N	V	L	.	.	.	.	.	L	D	E	P	A	Y	S	G	T
Template Known Secondary structure	T	S				T	T				.														T			T	T	T	T	S		G	G	G	T								S	S															T	T					.	.	.	.	.			S	S
Template Predicted Secondary structure											.																																																								.	.	.	.	.
Template SS confidence
	72	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.						.	.	.	140	.	.	.	.	.

	187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.													.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																			.													.	.	.	.	.	.	.	.	.	.	.	.										.
Query SS confidence																			.													.	.	.	.	.	.	.	.	.	.	.	.										.
Query Sequence	P	D	V	M	R	Q	A	G	C	T	L	H	E	V	G	T	T	N	.	R	T	H	A	N	D	Y	R	Q	A	V	N	.	.	.	.	.	.	.	.	.	.	.	.	E	N	T	A	L	L	M	K	V	.	H	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D
Query Conservation																			.													.	.	.	.	.	.	.	.	.	.	.	.										.
Alig confidence																			.													.	.	.	.	.	.	.	.	.	.	.	.										.														.
Template Conservation																																																																			.
Template Sequence	L	Q	S	L	H	P	L	G	C	N	I	I	N	V	A	S	D	E	S	G	I	V	P	D	S	L	R	D	I	L	S	R	W	K	P	E	D	A	K	N	P	Q	K	N	T	P	K	F	L	Y	T	V	P	N	G	N	N	P	T	G	N	S	L	T	S	E	.	R	K	K	E	I	Y	E	L	A	R	K	Y	D
Template Known Secondary structure					G	G	G	T										T	T												T	T	S		G	G	G	G	S		G	G	G				S							S	S		T	T	T								.													T
Template Predicted Secondary structure																																																																			.
Template SS confidence
	146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.

	253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	P	V	V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	L	V	S	F	S	G	D	K	L	L	G	G	P	Q	A	G	I	I	V	G	K	K	E	M	I	A	R	L	Q	S	H	P	L	K	R	A	L	R	A	D	K	M	T	L	A
Query Conservation
Alig confidence																						.	.	.	.
Template Conservation																						.	.	.	.
Template Sequence	F	L	I	I	E	D	D	P	Y	Y	F	L	Q	F	N	K	F	R	V	P	T	.	.	.	.	F	L	S	M	D	V	D	G	R	V	I	R	A	D	S	F	S	I	I	S	S	G	L	R	I	G	F	L	T	G	P	K	P	L	I	E	R	V	I	L	H	I	Q	V	S	T	L	H	P	S	T	F	N	Q	L
Template Known Secondary structure								T	T	T	T		B	S	S	S	S					.	.	.	.	S	G	G	G		S	S	S													S	T	T																				T	T	T	T		S	S
Template Predicted Secondary structure																						.	.	.	.
Template SS confidence
	225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.					.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

	333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q	A	Q	R	L	Q	A	P	L	A	A	H	Y	G	A	E	F	A	V	Q	V	M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T
Query Conservation
Alig confidence							.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	M	I	S	Q	L	L	.	.	.	.	.	.	.	H	E	W	G	E	E	G	F	M	A	H	V	D	R	V	I	D	F	Y	S	N	Q	K	D	A	I	L	A	A	A	D	K	W	L	T	G	L	A	E	W	H	V	P	A	A	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	L	W	I
Template Known Secondary structure							.	.	.	.	.	.	.																																			B	T	T							S	B	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	302	.	.	.	.	.								.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.																	.	.	.	.

	413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.									.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.
Query Sequence	P	H	D	G	R	G	S	H	L	E	S	L	A	A	R	W	R	E	L	P	V	P	V	I	G	.	.	.	.	.	.	.	.	R	I	Y	D	G	R	L	W	L	D	L	R	C	L	E	D	E	Q	R	F	L	E	M	L
Query Conservation																										.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.												.
Template Conservation																																													.
Template Sequence	K	V	K	G	I	N	D	V	K	E	L	I	E	E	K	A	V	K	M	G	V	L	M	L	P	G	N	A	F	Y	V	D	S	S	A	P	S	P	Y	L	R	A	S	F	.	S	S	A	S	P	E	Q	M	D	V	A	F
Template Known Secondary structure			T	T		S		S						T					T	T						G	G	G	G	S	S	S	T	T	S										.	S	S
Template Predicted Secondary structure																																													.
Template SS confidence
	359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.		.	.	.	.	.	.	.	410	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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