Job Description P0A821 Confidence 99.93% Date Thu Jan 5 11:06:39 GMT 2012 Rank 45 Aligned Residues 344 % Identity 15% Template c3caiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein Resolution 1.80 Å

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		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130			.	.	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																															.	.														.	.
Query SS confidence																																															.	.														.	.
Query Sequence		L	T	G	T	V	L	H	T	N	L	G	R	A	L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	R	S	P	V	T	L	E	Y	D	L	D	D	A	G	R	G	H	R	.	.	D	R	A	L	A	Q	L	L	C	R	I	T	G	.	.	A	E	D	A	C	I	V	N	N	N	A	A	A	V	L	L	M	L
Query Conservation																																															.	.														.	.
Alig confidence																																															.	.														.	.
Template Conservation
Template Sequence		G	D	G	W	V	H	F	D	A	P	A	G	M	L	I	P	D	S	V	A	T	T	V	S	T	A	F	R	R	S	G	A	S	T	V	G	A	H	P	S	A	R	R	S	A	A	V	L	D	A	A	R	E	A	V	A	D	L	V	N	A	D	P	G	G	V	V	L	G	A	D	R	A	V	L	L	S	L	L	A
Template Known Secondary structure		T	S	S					B	G	G	G																					S	S	S		S	S	S																						T			G	G	G					S
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		162	.	.	.					.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure						.	.	.	.																																									.	.	.
Query SS confidence						.	.	.	.																																									.	.	.
Query Sequence		A	A	T	A	.	.	.	.	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C	T	L	H	E	V	G	T	T	N	R	.	.	.	T	H	A	N	D	Y	R	Q	A	V	N	E	N	T	A	L	L	M	K	V	H	T	S	N	Y	S	I	Q	G
Query Conservation						.	.	.	.																																									.	.	.
Alig confidence						.	.	.	.																			.	.																					.	.	.																													.
Template Conservation																												.	.																																																				.
Template Sequence		E	A	S	S	S	R	A	G	L	G	Y	E	V	I	V	S	R	L	D	D	E	A	N	I	A	P	.	.	W	L	R	A	A	H	R	Y	G	A	K	V	K	W	A	E	V	D	I	E	T	G	E	L	P	T	W	Q	W	E	S	L	I	S	K	S	T	R	L	V	A	V	N	S	A	S	G	T	L	G	G	.
Template Known Secondary structure				T	G	G	G	G	B	T	T							T	T	S		G	G	G	T			.	.									B										T	T	T					G	G	G							T	T								S	B		T	T	T		B	.
Template Predicted Secondary structure																												.	.																																																				.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D	V	P	V	V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	L	V	S	F	S	G	D	K	L	L	G	G	P	Q	A	G	I	I	V	G	K	K	E	M	I	A	R
Query Conservation
Alig confidence		.	.	.																																.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	V	T	D	L	R	A	M	T	K	L	V	H	D	V	G	A	L	V	V	V	D	H	S	A	A	A	P	Y	R	L	L	.	.	.	.	.	.	.	.	.	.	.	D	I	R	E	T	D	A	D	V	V	T	V	N	A	H	A	W	G	G	P	P	I	G	A	M	V	F	R	D	P	S	V	M	N	S
Template Known Secondary structure		.	.	.	B													T	T								T	T	T	T	T	T				.	.	.	.	.	.	.	.	.	.	.								S						G	G	G	G	T	S		S							S							T
Template Predicted Secondary structure		.	.	.																																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.												.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.										.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	S	H	P	L	K	R	A	L	.	.	.	.	.	.	.	.	.	R	A	D	K	M	T	L	A	A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q	A	Q	R	L	Q	A	P	L	A	A	H	Y	G	A	E	F	A	V
Query Conservation												.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.																						.
Template Conservation																																										.
Template Sequence		F	G	S	V	S	T	N	P	Y	A	T	G	P	A	R	L	E	I	G	V	H	Q	F	G	L	L	A	G	V	V	A	S	I	E	Y	L	A	A	L	D	.	E	S	A	R	G	S	R	R	E	R	L	A	V	S	M	Q	S	A	D	A	Y	L	N	R	V	F	D	Y	L	M	V	S	L	R	S	L	P	L	V
Template Known Secondary structure		S					S		T	T			G	G	G	G	G			S																			T	S	S	.	T	T			S	S																													T		T	T
Template Predicted Secondary structure																																										.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.															.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Query Sequence		Q	V	M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	G	S	H	L	E	S	L	A	A	R	W	R	E	L	P	V	P	V	I	G	R	I	Y	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	L	W	L	D	L	R	.	.
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.						.	.	.																.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.						.	.	.																.	.
Template Sequence		M	L	I	G	R	P	E	A	Q	I	P	V	.	.	.	.	.	.	.	.	.	.	.	V	S	F	A	V	.	.	.	H	K	V	P	A	D	R	V	V	Q	R	L	A	D	N	.	.	G	I	L	A	I	A	N	T	G	S	R	V	L	D	V	L	G	V	N	D	V	G	G	A	V	T	V	G	L	A	H	Y
Template Known Secondary structure								S	S	B		S		.	.	.	.	.	.	.	.	.	.	.						.	.	.	T	T	B												T	.	.	T								S								T	T	T	T	T	T									T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.						.	.	.																.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.												330	.	.	.	.				.	.	.	.	.	340	.	.	.	.	.	.	.	.	.			350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
			450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	C	L	E	D	E	Q	R	F	L	E	M	L	L	K
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		S	T	M	A	E	V	D	Q	L	V	R	A	L	A	S
Template Known Secondary structure																T
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions