Job Description P0A821 Confidence 100.00% Date Thu Jan 5 11:06:39 GMT 2012 Rank 16 Aligned Residues 316 % Identity 14% Template c3aemD_ PDB info PDB header:lyase Chain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																							.																																						.
Query SS confidence																							.																																						.
Query Sequence		V	A	Q	A	M	R	S	P	V	T	L	E	Y	D	L	D	D	A	G	R	G	.	H	R	D	R	A	L	A	Q	L	L	C	R	I	T	G	A	E	D	A	C	I	V	N	N	N	A	A	A	V	L	L	M	L	A	A	T	A	.	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R
Query Conservation																							.																																						.
Alig confidence																							.																																						.																			.	.
Template Conservation																																																																																.	.
Template Sequence		T	Q	Q	G	A	D	L	F	M	G	K	G	E	G	H	I	Y	S	R	L	G	N	P	T	V	E	Q	F	E	E	M	V	C	S	I	E	G	A	A	G	S	A	A	F	G	S	G	M	G	A	I	S	S	S	T	L	A	F	L	Q	K	G	D	H	L	I	A	G	D	T	L	Y	G	C	T	V	S	L	.	.
Template Known Secondary structure										T	T		S	S			S	B	T	T	T																	T		S						S	S										T	T	T			T	T							S	S									.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		1537	.	.	1540	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	D	V	M	R	Q	A	G	C	T	L	H	E	V	G	T	T	N	R	T	H	A	N	D	Y	R	Q	A	V	N	E	N	T	A	L	L	M	K	V	H	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D	V	P	V	V	T	D	L	G	S	G	S	L	V
Query Conservation
Alig confidence																					.	.	.																										.	.	.	.
Template Conservation																					.	.	.																										.	.	.	.
Template Sequence		F	T	H	W	L	P	R	F	G	I	E	V	D	L	I	D	T	S	D	.	.	.	V	E	K	V	K	A	A	W	K	P	N	T	K	M	V	Y	L	E	S	P	A	N	P	T	C	.	.	.	.	K	V	S	D	I	K	G	I	A	V	V	C	H	E	R	G	A	R	L	V	V	D	A	T	F	T	S	P	C
Template Known Secondary structure									T	T								T	T	S	.	.	.										T	T								S	S		T	T	T		.	.	.	.																T								T	T	T		T	T
Template Predicted Secondary structure																					.	.	.																										.	.	.	.
Template SS confidence
		1615	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.	.				.	.	.	.	.	.	1640	.	.	.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.					.	1660	.	.	.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.					.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																																						.	.	.	.
Query SS confidence																																						.	.	.	.
Query Sequence		D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	L	V	S	F	S	G	D	K	L	L	G	G	P	Q	.	.	.	.	A	G	I	I	V	G	K	K	E	M	I	A	R	L	Q	S	H	P	L	K	R	A	L	R	A	D	K	M	T	L	A	A	L	E	A	T	L	R	L	Y
Query Conservation																																						.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	F	L	K	P	L	E	L	G	A	D	I	A	L	H	S	V	S	K	Y	I	N	G	H	G	D	V	I	G	G	V	S	S	A	K	T	A	E	D	I	A	T	I	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	Y	R	K	D	A	G	S	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	T			G	G	G	G	T		S						T	T	T	T	T	T		S	S	S									S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														1688	.	1690	.	.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.	.	.	.	.	.	.	1730																	.	.	.	.	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q	A	Q	R	L	Q	A	P	L	A	A	H	Y	G	A	E	F	A	V	Q	V	M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	G	S	H	L
Query Conservation
Alig confidence																																												.	.
Template Conservation																																												.	.
Template Sequence		M	A	P	M	D	A	F	L	C	A	R	G	M	K	T	L	P	I	R	M	Q	I	H	M	E	N	G	L	K	V	A	K	F	L	E	Q	H	E	K	I	V	K	.	.	V	N	H	P	G	L	E	S	F	P	G	H	D	I	A	K	K	Q	M	T	G	Y	G	S	T	F	L	F	E	M	K	S	F	E	A	A
Template Known Secondary structure															T	T																					T		T	T				.	.				T	T	S	T	T	S	T	T									S	S			S							S	S
Template Predicted Secondary structure																																												.	.
Template SS confidence
		1740	.	.	.	.	.	.	.	.	.	1750	.	.	.	.	.	.	.	.	.	1760	.	.	.	.	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.			.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.	.	.
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.																											.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	S	L	A	A	R	W	R	E	L	P	V	P	V	I	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Y	D	G	R	L	W	L	D	L	R	C	L	E	D	E	Q	R	F	L	E	M	L	L	K
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation																																																							.
Template Sequence		K	K	L	M	E	H	L	K	V	C	T	L	A	V	S	L	G	C	V	D	T	L	I	E	H	P	A	S	M	T	H	A	A	V	P	E	N	I	M	R	K	Q	G	I	T	P	E	L	V	R	I	S	V	.	G	I	E	N	V	D	D	I	I	A	D	L	K	Q
Template Known Secondary structure						T	S		S	S	S				S					S	S						T	T	T	T	T	T	T	T	S									T			T	T							.		S	S
Template Predicted Secondary structure																																																							.
Template SS confidence
		1818	.	1820	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870		.	.	.	.	.	.	.	.	.	1880	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions