Job Description P0A821 Confidence 99.82% Date Thu Jan 5 11:06:39 GMT 2012 Rank 182 Aligned Residues 337 % Identity 16% Template c2zc0C_ PDB info PDB header:transferase Chain: C: PDB Molecule:alanine glyoxylate transaminase; PDBTitle: crystal structure of an archaeal alanine:glyoxylate aminotransferase Resolution 2.30 Å

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		81	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.					.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure							.																												.	.																														.	.	.	.
Query SS confidence							.																												.	.																														.	.	.	.
Query Sequence		R	P	V	I	N	.	L	T	G	T	V	L	H	T	N	L	G	R	A	L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	.	.	R	S	P	V	T	L	E	Y	D	L	D	D	A	G	R	G	H	R	D	R	A	L	A	Q	L	L	C	R	I	.	.	.	.	T	G	A	E	D	A	C	I	V	N	N	N
Query Conservation							.																												.	.																														.	.	.	.
Alig confidence							.								.	.	.	.	.																.	.																.														.	.	.	.
Template Conservation															.	.	.	.	.																																	.
Template Sequence		V	K	L	I	S	L	A	A	G	D	P	D	P	.	.	.	.	.	E	L	I	P	R	A	V	L	G	E	I	A	K	E	V	L	E	K	E	P	K	S	V	M	Y	T	P	A	N	G	I	P	.	E	L	R	E	E	L	A	A	F	L	K	K	Y	D	H	L	E	V	S	P	E	N	I	V	I	T	I	G	G
Template Known Secondary structure							S							T	.	.	.	.	.	T	T	S																	G	G	G	G	S				T	T				.														S						G	G	G
Template Predicted Secondary structure															.	.	.	.	.																																	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.						.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.									.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.
Query Sequence		A	A	A	V	L	L	M	L	A	A	T	A	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C	T	L	H	E	V	G	T	T	N	.	.	.	.	.	.	.	.	R	T	H	A	N	D	Y	R	Q	A	V	N	E	N	T	A	L	L	M	K	V
Query Conservation																																																					.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.																												.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.
Template Sequence		T	G	A	L	D	L	L	G	R	V	L	I	D	P	G	D	V	V	I	.	.	.	.	.	T	E	N	P	S	Y	I	N	T	L	L	A	F	E	Q	L	G	A	K	I	E	G	V	P	V	D	N	D	G	M	R	V	D	L	L	E	E	K	I	K	E	L	K	A	K	G	Q	K	V	K	L	I	Y	T	I	P
Template Known Secondary structure															T	T					.	.	.	.	.				S											T	T	T										T	T																	T	T
Template Predicted Secondary structure																					.	.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.						.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		H	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D	V	P	V	V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	L	V	S	F	S	G	D	K	L	L	G	G	P	Q	.	A	G	I
Query Conservation																																																																														.
Alig confidence															.																																			.	.	.	.																									.
Template Conservation															.																																			.	.	.	.
Template Sequence		T	G	Q	N	P	M	G	V	T	M	S	M	E	.	R	R	K	A	L	L	E	I	A	S	K	Y	D	L	L	I	I	E	D	T	A	Y	N	F	M	R	Y	E	G	G	D	I	V	P	.	.	.	.	L	K	A	L	D	N	E	G	R	V	I	V	A	G	T	L	S	K	V	L	G	T	G	F	R	I	G	W
Template Known Secondary structure		S	S		T	T	T								.													T								T	T	T	T		B	S	S		S	S				.	.	.	.	G	G	G	G		S	S									S						S	S	S
Template Predicted Secondary structure															.																																			.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.					230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	G	K	K	E	M	I	A	R	L	Q	S	H	P	L	K	R	A	L	R	A	D	K	M	T	L	A	A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q	A	Q	R	L	Q	A	P	L	A	A	H	Y	G	A	E	F	A
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.																																		.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.																																		.	.	.
Template Sequence		I	I	A	E	G	E	I	L	K	K	V	L	M	Q	K	Q	P	I	D	F	C	A	P	A	I	S	Q	Y	I	A	L	E	Y	L	.	.	.	.	.	.	.	.	.	K	R	G	Y	F	E	K	Y	H	L	E	G	A	L	L	G	Y	K	E	K	R	D	I	M	L	K	A	L	E	N	H	L	P	.	.	.	N
Template Known Secondary structure																	T	T	T	T	S	S	S													.	.	.	.	.	.	.	.	.		T	T						T	T	T	T																					S	.	.	.	S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.																																		.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.										.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.				.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.		.	430	.	.	.	.	.	.	.	.	.	440								.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure																																														.													.	.	.	.	.	.	.
Query SS confidence																																														.													.	.	.	.	.	.	.
Query Sequence		V	Q	V	M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	G	S	H	L	E	S	L	A	A	R	W	.	R	E	L	P	V	P	V	I	G	R	I	Y	.	.	.	.	.	.	.	D	G	R	L	W	L	D	L	R	C	L	E	D	E	Q	R
Query Conservation																																														.													.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.													.	.	.	.	.	.	.									.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.
Template Sequence		A	E	F	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	A	G	M	F	V	M	F	F	L	P	E	G	A	D	G	I	S	F	A	N	E	L	M	E	R	E	G	V	V	V	V	P	G	K	P	F	Y	T	D	E	S	G	K	N	A	I	R	L	N	F	.	S	R	P	S	K	E	E
Template Known Secondary structure		S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	B	S	S							S	T	T													T	T					B			G	G	G		S	S	S			T	T							.	S	S	S		T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.
Template SS confidence
		326	.	.	.	330																.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.		.	.	.	.	.	.	.
		457	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	E	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	I	G	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		390	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions