Job Description P0A821 Confidence 99.84% Date Thu Jan 5 11:06:39 GMT 2012 Rank 168 Aligned Residues 317 % Identity 15% Template c2z9wA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal Resolution 1.70 Å

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		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170
Predicted Secondary structure																																																				.	.																							.
Query SS confidence																																																				.	.																							.
Query Sequence		N	L	G	R	A	L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	R	S	P	V	T	L	E	Y	D	L	D	D	A	G	R	G	H	R	D	R	A	L	A	Q	L	L	C	R	I	T	G	.	.	A	E	D	A	C	I	V	N	N	N	A	A	A	V	L	L	M	L	A	A	T	A	.	S	G	K	E	V
Query Conservation																																																				.	.																							.
Alig confidence																													.	.	.	.	.	.	.																	.	.																							.
Template Conservation																													.	.	.	.	.	.	.
Template Sequence		T	A	G	P	V	N	A	Y	P	E	V	L	R	G	L	G	R	T	V	L	Y	D	Y	D	P	A	F	.	.	.	.	.	.	.	Q	L	L	Y	E	K	V	V	D	K	A	Q	K	A	M	R	L	S	N	K	P	V	I	L	H	G	E	P	V	L	G	L	E	A	A	A	A	S	L	I	S	P	D	D	V	V
Template Known Secondary structure			S	S	S											T	T	S					T	T	S				.	.	.	.	.	.	.															T	T		S	S						S	S		T														T	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.								.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C	T	L	H	E	V	G	T	T	N	.	.	R	T	H	A	N	D	Y	R	Q	A	V	N	E	N	T	A	L	L	M	K	V	H	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G
Query Conservation																																				.	.
Alig confidence												.	.	.	.																					.	.																																		.	.
Template Conservation												.	.	.	.																																																								.	.
Template Sequence		L	N	L	A	S	G	V	Y	G	K	.	.	.	.	G	F	G	Y	W	A	K	R	Y	S	P	H	L	L	E	I	E	V	P	Y	N	E	A	I	D	P	Q	A	V	A	D	M	L	K	A	H	P	E	I	T	V	V	S	V	C	H	H	D	T	P	S	G	T	I	N	.	.	P	I	D	A	I	G	A	L	V
Template Known Secondary structure						S	S					.	.	.	.											S									T	T	S															T	T								S			G	G	G	T				.	.
Template Predicted Secondary structure												.	.	.	.																																																								.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.					.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure																																																						.																							.	.	.	.	.
Query SS confidence																																																						.																							.	.	.	.	.
Query Sequence		K	E	L	D	V	P	V	V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	L	V	S	F	S	G	D	K	L	L	G	G	P	.	Q	A	G	I	I	V	G	K	K	E	M	I	A	R	L	Q	S	H	P	L	K	R	.	.	.	.	.
Query Conservation																																																						.																							.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.																						.																							.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	A	H	G	A	Y	L	I	V	D	A	V	S	S	F	G	G	M	K	T	.	.	.	.	.	.	.	.	.	.	.	H	P	E	D	C	K	A	D	I	Y	V	T	G	P	N	K	C	L	G	A	P	P	G	L	T	M	M	G	V	S	E	R	A	W	A	K	M	K	A	N	P	L	A	P	R	A	S	M	L
Template Known Secondary structure				T	T								T	T	T	B	T	T	B	S		.	.	.	.	.	.	.	.	.	.	.		G	G	G	T	T		S						S	S	S	T	T				S																	T		T	T	S			S	S	T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.												.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
																	323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	R	A	D	K	M	T	L	A	A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q	A	Q	R	L	Q	A	P	L	A	A	H	Y	G	A	E	F	A	V	Q	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Sequence		S	I	V	D	W	E	N	A	W	S	R	D	K	P	F	P	F	T	P	S	V	S	E	I	N	G	L	D	V	A	L	D	L	Y	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	E	G	P	E	A	V	W	A	R	H	A	L	T	A	K	A	M	R	A	G	V	T	A	M	.	G	L	S	V
Template Known Secondary structure			S	G	G	G	T	T	T	T	S	T	T	S			S	S																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	T			B
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.																.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.		.	.	.	.				.	.	.	.	440	.	.	.	.	.	.					.	.	.	450	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.					.	.	.												.	.	.	.
Query SS confidence																																														.					.	.	.												.	.	.	.
Query Sequence		M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	G	S	H	L	E	S	L	A	A	R	W	R	E	L	.	P	V	P	V	.	.	.	I	G	R	I	Y	D	G	R	L	W	L	.	.	.	.	D	L	R	C	L	E	D	E	Q	R	F	L	E
Query Conservation																																														.					.	.	.												.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.																								.					.	.	.												.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	A	A	S	D	S	I	A	S	P	.	.	.	.	.	.	.	.	.	.	.	T	T	T	A	V	R	T	P	D	G	V	D	E	K	A	L	R	Q	A	A	R	A	R	Y	G	V	V	F	S	S	G	R	G	E	T	L	G	K	L	T	R	I	G	H	M	G	P	T	A	Q	P	I	Y	A	I	A	A	L	T
Template Known Secondary structure		S	S	S	S	G	G	G	B		S	.	.	.	.	.	.	.	.	.	.	.	S								T	T																			B				G	G	G	T	T	T								G	G	G		S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.												.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
		460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		364	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions