Phyre 2 alignment of P0A821 with c2x3lA

Job Description P0A821
Confidence 99.91% Date Thu Jan 5 11:06:39 GMT 2012

Rank 81 Aligned Residues 274

% Identity 14% Template c2x3lA_

PDB info PDB header:lyase Chain: A: PDB Molecule:orn/lys/arg decarboxylase family protein; PDBTitle: crystal structure of the orn_lys_arg decarboxylase family2 protein sar0482 from methicillin-resistant staphylococcus3 aureus

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence	R	A	L	A	Q	L	L	C	R	I	T	G	A	E	D	A	C	I	V	N	N	N	A	A	A	V	L	L	M	L	A	A	T	A	.	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C	T	L	H	E	V	G	T	T	N	R	T	H	A	N	D
Query Conservation																																			.
Alig confidence																																			.																.	.	.	.	.	.																			.	.
Template Conservation																																																			.	.	.	.	.	.																			.	.
Template Sequence	L	K	S	M	K	Q	V	E	K	H	S	D	Y	D	G	Y	F	L	V	N	G	T	T	S	G	I	L	S	V	I	Q	S	F	S	Q	K	K	G	D	I	L	M	A	R	N	V	H	K	S	V	.	.	.	.	.	.	L	H	A	L	D	I	S	Q	Q	E	G	H	F	I	E	T	H	Q	.	.	S	P	L	T
Template Known Secondary structure									S		T	T							S	S												T	T	T	T	S	S	S						T	T						.	.	.	.	.	.								T											.	.		T	T	T
Template Predicted Secondary structure																																																			.	.	.	.	.	.																			.	.
Template SS confidence
	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.							110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.			.	.	130	.

	211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	R	Q	A	V	N	E	N	T	A	L	L	M	K	V	H	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D	V	P	V	V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	L	V	S
Query Conservation
Alig confidence																		.						.	.	.	.																																		.	.	.	.	.	.	.
Template Conservation																		.						.	.	.	.																																		.	.	.	.	.	.	.
Template Sequence	N	H	Y	N	K	V	N	L	H	K	L	V	V	L	T	Y	P	.	N	Y	Y	G	E	.	.	.	.	T	F	N	V	E	E	V	I	K	S	L	H	Q	L	N	I	P	V	L	I	D	E	A	H	G	A	H	F	G	L	Q	G	F	.	.	.	.	.	.	.	P	D	S	T	L	N	Y	Q	A	D	Y	V	V
Template Known Secondary structure	S	S														S	S	.		T	T	S		.	.	.	.														T	T								T	T		T	T	T	T	S	T	T	S	.	.	.	.	.	.	.				G	G	G	G	T		S
Template Predicted Secondary structure																		.						.	.	.	.																																		.	.	.	.	.	.	.
Template SS confidence
	132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.					.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.								.	.	.	190	.	.	.	.	.	.	.	.	.

	291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310			.	.	.	.	.	.	.	.		.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.									.
Query SS confidence																					.	.									.
Query Sequence	F	S	G	D	K	L	L	G	G	P	Q	A	G	I	I	V	G	K	K	E	.	.	M	I	A	R	L	Q	S	H	.	P	L	K	R	A	L	R	A	D	K	M	T	L	A	A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q
Query Conservation																					.	.									.
Alig confidence																					.	.									.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	Q	S	F	H	T	L	P	A	L	T	M	G	S	V	L	Y	I	H	K	N	A	P	Y	R	E	N	I	I	E	Y	L	S	Y	F	Q	T	S	S	P	S	Y	L	I	M	A	S	L	E	S	A	A	Q	F	Y	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Y	D	S	T	L	F	F	A	K
Template Known Secondary structure							S	S		T	T								T	T		T	T												S		S	S																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.																.	.	.	.	.	.	.	.	270	.

	368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	Q	R	L	Q	A	P	L	A	A	H	Y	G	A	E	F	A	V	Q	V	M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	G	S	H	L	E	S	L	A	A	R	W	R	E	L	P	V	P	V	I	G	R	I	Y	D	G	R	L	W	L	D
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.																		.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.																		.	.
Template Sequence	R	A	Q	L	I	E	C	L	E	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	E	M	L	Q	V	D	D	P	L	K	L	L	I	K	.	.	.	Y	E	G	F	T	G	H	D	I	Q	N	W	F	M	N	A	H	.	.	I	Y	L	E	L	A	D	D	Y	Q	A	L	A
Template Known Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T							S	S	T	T						.	.	.		T	T	S												T	T	.	.				S				S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.																		.	.
Template SS confidence
	273	.	.	.	.	.	.	280	.	.	.																			.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.				300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.			.	.	.	320	.	.	.	.	.	.	.	.	.

	448	.	450	.			.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence	L	R	C	L	.	.	E	D	E	Q	R	F	L	E	M	L	L	K
Query Conservation					.	.
Alig confidence					.	.
Template Conservation
Template Sequence	I	L	P	L	W	H	H	D	D	T	Y	L	F	D	S	L	L	R
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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