Job Description P0A821 Confidence 99.87% Date Thu Jan 5 11:06:39 GMT 2012 Rank 128 Aligned Residues 312 % Identity 11% Template c2vycA_ PDB info PDB header:lyase Chain: A: PDB Molecule:biodegradative arginine decarboxylase; PDBTitle: crystal structure of acid induced arginine decarboxylase2 from e. coli Resolution 2.4 Å

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		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																				.																	.																																						.	.	.	.	.	.	.
Query SS confidence																				.																	.																																						.	.	.	.	.	.	.
Query Sequence		R	A	L	A	Q	L	L	C	R	I	T	G	A	E	D	A	C	I	.	V	N	N	N	A	A	A	V	L	L	M	L	A	A	T	A	.	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C	T	L	H	E	V	G	T	.	.	.	.	.	.	.
Query Conservation																				.																	.																																						.	.	.	.	.	.	.
Alig confidence																				.																	.															.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.
Template Sequence		G	E	S	E	K	Y	A	A	R	V	F	G	A	D	R	S	W	S	V	V	V	G	T	S	G	S	N	R	T	I	M	Q	A	C	M	T	D	N	D	V	V	V	V	D	R	N	C	H	K	S	.	.	.	.	.	.	I	E	Q	G	L	M	L	T	G	A	K	P	V	Y	M	V	P	S	R	N	R	Y	G	I
Template Known Secondary structure													T		S						S	S																T	T							S	S					.	.	.	.	.	.																			B		T	T	S
Template Predicted Secondary structure																																																				.	.	.	.	.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.							.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
							203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.											220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	T	N	R	T	H	A	N	D	Y	R	Q	A	V	N	E	N	T	.	.	.	.	.	.	.	.	.	.	A	L	L	M	K	V	H	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D	V	P	V	V	T	D	L	G	S	G	S	L	V	D	L
Query Conservation		.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation																																																	.	.	.	.	.
Template Sequence		I	G	P	I	Y	P	Q	E	M	Q	P	E	T	L	Q	K	K	I	S	E	S	P	L	T	K	D	K	A	G	Q	K	P	S	Y	C	V	V	T	N	C	T	Y	D	G	V	C	Y	.	.	.	.	.	N	A	K	E	A	Q	D	L	L	E	K	T	S	D	R	L	H	F	D	E	A	W	Y	G	Y	A	R	F
Template Known Secondary structure		B					G	G	G	G	S												T	T	T	G	G	G	T	T				S						S	S		T	T	S				.	.	.	.	.										T	T	T		S							T	T		T	T	G	G	G
Template Predicted Secondary structure																																																	.	.	.	.	.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.						.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
		268	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.								.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.					.	.	.	.	.	.	.		.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure												.											.	.	.	.	.	.	.														.												.	.	.	.								.
Query SS confidence												.											.	.	.	.	.	.	.														.												.	.	.	.								.
Query Sequence		S	Q	Y	G	L	P	K	E	P	M	.	P	Q	E	L	I	A	A	G	V	S	.	.	.	.	.	.	.	L	V	S	F	S	G	D	K	L	L	G	G	P	.	Q	A	G	I	I	V	G	K	K	E	M	.	.	.	.	I	A	R	L	Q	S	H	.	P	L	K	R	A	L	R	A	D	K	M	T	L	A	A
Query Conservation												.											.	.	.	.	.	.	.														.												.	.	.	.								.
Alig confidence					.	.	.	.	.	.		.											.	.	.	.	.	.	.									.					.												.	.	.	.								.
Template Conservation					.	.	.	.	.	.																												.
Template Sequence		N	P	I	.	.	.	.	.	.	Y	A	D	H	Y	A	M	R	G	E	P	G	D	H	N	G	P	T	V	F	A	T	H	S	T	H	L	.	L	N	A	L	S	Q	A	S	Y	I	H	V	R	E	G	R	G	A	I	N	F	S	R	F	N	Q	A	Y	M	M	H	A	T	T	S	P	L	Y	A	I	C	A	S
Template Known Secondary structure			G	G	.	.	.	.	.	.	G	T	T	S	S	S	S		S						S	S	B											.		S			T	T										B	T														T	S		S	S
Template Predicted Secondary structure					.	.	.	.	.	.																												.
Template SS confidence
		357	.	.							360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.		.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.																															.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q	A	Q	R	L	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	A	A	H	Y	G	A	E	F
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	D	V	A	V	S	M	M	D	G	N	S	G	L	S	L	T	Q	E	V	I	D	E	A	V	D	F	R	Q	A	M	A	R	L	Y	K	E	F	T	A	D	G	S	W	F	F	K	P	W	N	K	E	V	V	T	D	P	Q	T	G	K	T	Y	D	F	A	D	A	P	T	K	L	L	T	T	V	Q	D	C	W
Template Known Secondary structure										S	T																														T	T	T							S	S		S					T	T	T						G	G	G	S									G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.									.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.
Query Sequence		A	V	Q	V	M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	.	.	.	.	.	.	.	.	G	S	H	L	E	S	L	A	A	R	W	R	E	L	P	V	P	V	I	G	R	I	Y	D	G	R	L	W	L	D	L	R	C	L	E	D	E	Q
Query Conservation																																				.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.													.	.
Template Conservation																																																								.	.
Template Sequence		V	M	H	P	G	E	S	W	H	G	F	K	D	I	P	D	N	W	S	M	L	D	P	I	K	V	S	I	L	A	P	G	M	G	E	D	G	E	L	E	E	T	G	V	P	A	A	L	V	T	A	W	L	G	.	.	R	H	G	I	V	P	T	R	T	T	D	F	Q	I	M	F	L	F	S	M	G	V	T	R
Template Known Secondary structure		B			T	T		T	T	T			T	T			T	T	S					T	T							S		B		T	T	S	S	B		S	S													.	.	T	T	T				S				S	S								T	T			T
Template Predicted Secondary structure																																																								.	.
Template SS confidence
		511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.			.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.
		456	.	.	.	460	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	L	E	M	L	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	K	W	G	T	L	V	N
Template Known Secondary structure		T	T	T
Template Predicted Secondary structure
Template SS confidence
		589	590	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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