Job Description P0A821 Confidence 99.82% Date Thu Jan 5 11:06:39 GMT 2012 Rank 188 Aligned Residues 363 % Identity 15% Template c2qmaB_ PDB info PDB header:transferase Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4- PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus Resolution 1.81 Å

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		44	.	.	.	.	.	50	.	.			.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120
Predicted Secondary structure											.	.																																																																				.
Query SS confidence											.	.																																																																				.
Query Sequence		L	D	E	A	R	E	V	I	R	.	.	G	S	Q	T	L	P	A	W	C	E	N	W	A	Q	E	V	D	A	R	L	T	K	E	A	Q	S	A	L	R	P	V	I	N	L	T	G	T	V	L	H	T	N	L	G	R	A	L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	R	S	P	V	T	L	E	.	Y
Query Conservation											.	.																																																																				.
Alig confidence											.	.																															.	.	.	.	.	.	.	.	.	.																												.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.
Template Sequence		P	K	A	L	E	D	A	I	N	A	V	D	L	D	N	K	N	A	P	L	K	S	V	I	D	D	V	A	E	L	V	A	K	N	A	I	F	T	Q	H	P	.	.	.	.	.	.	.	.	.	.	D	C	I	A	H	L	H	T	P	P	L	X	P	A	V	A	A	E	A	X	I	A	A	L	N	Q	S	X	D
Template Known Secondary structure														S	S	S																T	G	G	G	S			T	T	S	T	.	.	.	.	.	.	.	.	.	.	T	B		S	S	S																						T	T
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.											.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.
		121	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.				.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.																						.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure														.													.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.													.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	D	D	A	G	R	G	H	R	D	R	.	A	L	A	Q	L	L	C	R	I	T	G	A	.	.	.	E	D	A	C	I	V	N	N	N	A	A	A	V	L	L	M	L	A	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	G	K	E	V	V	V	S	R	G
Query Conservation														.													.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.													.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	W	D	Q	A	S	S	A	T	Y	V	E	Q	K	V	V	N	W	L	C	D	K	Y	D	L	S	E	K	A	D	G	I	F	T	S	G	G	T	Q	S	N	Q	X	G	L	X	L	A	R	D	W	I	A	D	K	L	S	G	H	S	I	Q	K	L	G	L	P	D	Y	A	D	K	L	R	I	V	C	S	K	K
Template Known Secondary structure			G	G	G																			T	T			T	T							S	S																														S		T	T	G	G	G							T	T
Template Predicted Secondary structure
Template SS confidence
		592	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.					.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																																																.	.	.	.
Query SS confidence																																																.	.	.	.
Query Sequence		E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C	T	L	H	E	V	G	T	T	N	R	T	H	A	N	D	Y	R	Q	A	V	N	E	N	T	A	L	.	.	.	.	L	M	K	V	H	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L
Query Conservation																																																.	.	.	.
Alig confidence														.																																		.	.	.	.														.	.
Template Conservation														.																																																			.	.
Template Sequence		S	H	F	T	V	Q	K	S	A	S	W	X	.	G	L	G	E	K	A	V	X	T	V	D	A	N	A	D	G	T	X	D	I	T	K	L	D	E	V	I	A	Q	A	K	A	E	G	L	I	P	F	A	I	V	G	T	A	G	T	T	D	H	G	.	.	A	I	D	D	L	D	F	I	A	D	X	A	V	K	H
Template Known Secondary structure		S		T									T	.	T	S		G	G	G						B		T	T	S		B															T	T										B	S		T	T	T		.	.		B
Template Predicted Secondary structure														.																																																			.	.
Template SS confidence
		672	.	.	.	.	.	.	.	680	.	.	.		.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.			.	.	.	.	.	.	740	.	.	.	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		D	V	P	V	V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	L	V	S	F	S	G	D	K	L	L	G	G	P	.	Q	A	G	I	I	V	G	K	K	E	M	I	A	R	L	Q	S	H	P	L	K	R	A	L	R	A	D	K	M	T
Query Conservation																																																			.
Alig confidence																														.	.	.	.	.	.																.									.	.	.	.
Template Conservation																														.	.	.	.	.	.																									.	.	.	.
Template Sequence		D	X	W	X	H	V	D	G	A	Y	G	G	A	L	I	L	S	S	H	K	S	R	L	K	G	V	E	R	.	.	.	.	.	.	A	H	S	I	S	V	D	F	H	K	L	F	Y	Q	T	I	S	C	G	A	L	L	V	N	.	.	.	.	D	K	S	N	F	K	F	L	L	K	R	F	D	A	L	K	V	F
Template Known Secondary structure		T								T	T	G	G	G	G	G	G	S	T	T	G	G	G	G	T	T	G	G	G	.	.	.	.	.	.		S						T	T	S	T	T				S	S							S	.	.	.	.		G	G	G	G	G	G	G					T
Template Predicted Secondary structure																														.	.	.	.	.	.																									.	.	.	.
Template SS confidence
		749	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.							.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800					.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q	A	Q	R	L	Q	A	P	L	A	A	H	Y	G	A	E	F	A	V	Q	V	M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	T	X	Q	N	V	G	P	K	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	X	Y	D	H	L	L	A	Q	T	L	E	V	A	D	X	I	R	T	N	D	Q	F	E	L	L	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	L	S	T	V
Template Known Secondary structure							T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				T		T	T					S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		843	.	.	.	.	.	.	850	.	.	.																	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.																			.	.	.	.	.	.
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.						.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.						.	.	.	450	.	.	.	.		.	.	.	.	.	460	.	.	.
Predicted Secondary structure																				.	.	.	.	.																			.	.	.	.	.									.
Query SS confidence																				.	.	.	.	.																			.	.	.	.	.									.
Query Sequence		F	T	P	H	D	G	R	G	S	H	L	E	S	L	A	A	R	W	.	.	.	.	.	R	E	L	P	V	P	V	I	G	R	I	Y	D	G	R	L	W	L	.	.	.	.	.	D	L	R	C	L	E	D	E	.	Q	R	F	L	E	M	L	L	K
Query Conservation																				.	.	.	.	.																			.	.	.	.	.									.
Alig confidence																				.	.	.	.	.																			.	.	.	.	.									.
Template Conservation
Template Sequence		L	F	R	A	T	H	E	T	A	D	L	D	E	L	N	K	A	L	R	L	E	A	L	T	R	G	I	A	V	L	G	E	T	I	V	D	G	K	T	A	L	K	F	T	I	L	N	P	C	L	T	T	S	D	F	E	S	L	L	S	K	I	N	X
Template Known Secondary structure								S	S	S																	T	S		B							T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		889	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.