Job Description P0A821 Confidence 99.96% Date Thu Jan 5 11:06:39 GMT 2012 Rank 28 Aligned Residues 331 % Identity 16% Template c2po3B_ PDB info PDB header:transferase Chain: B: PDB Molecule:4-dehydrase; PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product Resolution 2.10 Å

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		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	R	S	P	V	T	L	E	Y	D	L	D	D	A	G	R	G	H	R	D	R	A	L	A	Q	L	L	C	R	I	T	G	A	E	D	A	C	I	V	N	N	N	A	A	A	V	L	L	M	L	A	A	T	A	S	G	K	E	V	V	V	S	R	G	E	L	V
Query Conservation
Alig confidence																								.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.
Template Sequence		I	D	R	A	R	L	Y	E	R	L	D	R	A	L	D	S	Q	W	L	S	N	G	.	.	.	.	.	.	.	G	P	L	V	R	E	F	E	E	R	V	A	G	L	A	G	V	R	H	A	V	A	T	C	N	A	T	A	G	L	Q	L	L	A	H	A	A	G	L	T	G	E	V	I	M	P	S	M	T	F	A
Template Known Secondary structure																		T			S	S	S	.	.	.	.	.	.	.																T	S	S						S														T			S						S	S	S		T
Template Predicted Secondary structure																								.	.	.	.	.	.	.
Template SS confidence
		2029	2030	.	.	.	.	.	.	.	.	.	2040	.	.	.	.	.	.	.	.	.	2050								.	.	.	.	.	.	.	.	.	2060	.	.	.	.	.	.	.	.	.	2070	.	.	.	.	.	.	.	.	.	2080	.	.	.	.	.	.	.	.	.	2090	.	.	.	.	.	.	.	.	.	2100	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.				.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																												.	.	.
Query SS confidence																												.	.	.
Query Sequence		E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C	T	L	H	E	V	G	T	T	N	.	.	.	R	T	H	A	N	D	Y	R	Q	A	V	N	E	N	T	A	L	L	M	K	V	H	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D	V	P	V
Query Conservation																												.	.	.
Alig confidence				.	.	.	.	.	.																			.	.	.																								.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.																																													.	.	.	.	.	.	.
Template Sequence		A	T	.	.	.	.	.	.	P	H	A	L	R	W	I	G	L	T	P	V	F	A	D	I	D	P	D	T	G	N	L	D	P	D	Q	V	A	A	A	V	T	P	R	T	S	A	V	V	G	V	H	L	.	.	.	.	.	.	.	W	G	R	P	C	A	A	D	Q	L	R	K	V	A	D	E	H	G	L	R	L
Template Known Secondary structure				.	.	.	.	.	.							T	T								B		T	T	T	S	S	B		S	T	T							T	T									G	.	.	.	.	.	.	.	G	G																T
Template Predicted Secondary structure				.	.	.	.	.	.																																													.	.	.	.	.	.	.
Template SS confidence
		2102	.							.	.	.	.	.	.	2110	.	.	.	.	.	.	.	.	.	2120	.	.	.	.	.	.	.	.	.	2130	.	.	.	.	.	.	.	.	.	2140	.	.	.	.	.	.	.								.	.	2150	.	.	.	.	.	.	.	.	.	2160	.	.	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	L	V	S	F	S	G	D	K	L	L	G	G	P	Q	A	G	I	I	V	G	.	K	K	E	M	I	A	R	L	Q	S	H	P	L	K	R	A	L	R	A	D	K	M	T	L	A	A	L
Query Conservation																																																						.
Alig confidence																								.	.	.	.	.	.	.	.																							.																										.	.
Template Conservation																								.	.	.	.	.	.	.	.																																																	.	.
Template Sequence		Y	F	D	A	A	H	A	L	G	C	A	V	D	G	R	P	A	G	S	L	G	D	.	.	.	.	.	.	.	.	A	E	V	F	S	F	H	A	T	K	A	V	N	A	F	E	G	G	A	V	V	T	D	D	A	D	L	A	A	R	I	R	A	L	H	N	F	G	F	D	L	P	G	G	S	P	A	G	.	.
Template Known Secondary structure						T	T		T	T				T	T			T	T	S	S	S	S	.	.	.	.	.	.	.	.	S							T	T	S	S	S			S	S							S												T	B	T	T	T	T		T	T			T	T		.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.																																																	.	.
Template SS confidence
		2169	2170	.	.	.	.	.	.	.	.	.	2180	.	.	.	.	.	.	.	.	.	2190									.	.	.	.	.	.	.	.	.	2200	.	.	.	.	.	.	.	.	.	2210	.	.	.	.	.	.	.	.	.	2220	.	.	.	.	.	.	.	.	.	2230	.	.	.	.	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.														.	400	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q	A	Q	R	L	Q	A	P	L	A	A	H	Y	G	A	E	F	A	V	Q	V	M	P	C	L	S	Q	I	G	S	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	V
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	G	T	N	A	K	M	S	E	A	A	A	A	M	G	L	T	S	L	D	A	F	P	E	V	I	D	R	N	R	R	N	H	A	A	Y	R	E	H	L	A	D	L	P	G	V	L	V	A	D	H	D	R	H	G	L	N	N	H	Q	Y	V	I	V	E	I	D	E	A	T	T	G	I	H	R	D	L	V	M
Template Known Secondary structure		.	.			B		B																																		T		S		T	T						G	G	G	G	S	B																S	S
Template Predicted Secondary structure		.	.
Template SS confidence
				2239	2240	.	.	.	.	.	.	.	.	.	2250	.	.	.	.	.	.	.	.	.	2260	.	.	.	.	.	.	.	.	.	2270	.	.	.	.	.	.	.	.	.	2280	.	.	.	.	.	.	.	.	.	2290	.	.	.	.	.	.	.	.	.	2300	.	.	.	.	.	.	.	.	.	2310	.	.	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.				450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure																																																		.	.	.
Query SS confidence																																																		.	.	.
Query Sequence		D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	G	S	H	L	E	S	L	A	A	R	W	R	E	L	P	V	P	V	I	G	R	I	Y	D	G	R	L	W	L	D	L	R	.	.	.	C	L	E	D	E	Q	R	F	L	E	M	L
Query Conservation																																																		.	.	.
Alig confidence																																																		.	.	.
Template Conservation
Template Sequence		E	V	L	K	A	E	G	V	H	T	R	A	Y	F	S	P	G	C	H	E	L	E	P	Y	R	G	Q	P	H	A	P	L	P	H	T	E	R	L	A	A	R	V	L	S	L	P	T	G	T	A	I	G	D	D	D	I	R	R	V	A	D	L	L
Template Known Secondary structure							T	T				B		T	T		S		G	G	G	S	T	T	T	T	T	S													T	T							S	T	T
Template Predicted Secondary structure
Template SS confidence
		2317	.	.	2320	.	.	.	.	.	.	.	.	.	2330	.	.	.	.	.	.	.	.	.	2340	.	.	.	.	.	.	.	.	.	2350	.	.	.	.	.	.	.	.	.	2360	.	.	.	.	.	.	.	.	.	2370	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions