Job Description P0A821 Confidence 99.92% Date Thu Jan 5 11:06:39 GMT 2012 Rank 63 Aligned Residues 340 % Identity 12% Template c2pb2B_ PDB info PDB header:transferase Chain: B: PDB Molecule:acetylornithine/succinyldiaminopimelate aminotransferase; PDBTitle: structure of biosynthetic n-acetylornithine aminotransferase from2 salmonella typhimurium: studies on substrate specificity and3 inhibitor binding Resolution 1.91 Å

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		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.							.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																										.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.
Query Sequence		D	A	R	L	T	K	E	A	Q	S	A	L	R	P	V	I	N	L	T	G	T	V	L	H	.	.	.	.	.	.	T	N	L	G	R	A	L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	R	S	P	V	T	L	E	Y	D	L	D	D	A	G	R	G	H	R	D	R	A	L	A	Q	L	L	C	R	I	T
Query Conservation																										.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.							.	.																			.	.	.	.
Template Conservation																																						.	.																			.	.	.	.
Template Sequence		A	D	F	I	P	V	K	G	K	G	S	R	V	W	D	Q	Q	G	K	E	Y	I	D	F	A	G	G	I	A	V	T	A	L	G	H	C	.	.	H	P	A	L	V	E	A	L	K	S	Q	G	E	T	L	W	H	T	.	.	.	.	S	N	V	F	T	N	E	P	A	L	R	L	G	R	K	L	I	D	A	T
Template Known Secondary structure		T	T								B	T					T	T							S	S					T		T	T		B	S	.	.													T	T					.	.	.	.		T	T	S																S
Template Predicted Secondary structure																																						.	.																			.	.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.					.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.										.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.										.	200	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.
Query Sequence		G	A	E	D	A	C	I	V	N	N	N	A	A	A	V	L	L	M	L	.	.	.	.	.	.	.	.	.	A	A	T	A	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C	T	L	H	.	.	.	.	.	.	.	.	.	E	V	G	T	T	N
Query Conservation																					.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.																				.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.
Template Sequence		F	A	E	R	V	L	F	M	N	S	G	T	E	A	N	E	T	A	F	K	L	A	R	H	Y	A	C	V	R	H	S	P	F	K	T	K	I	I	A	F	H	N	A	F	H	G	R	.	.	.	.	.	S	L	F	T	V	S	V	G	G	Q	P	K	Y	S	D	G	F	G	P	K	P	A	D	I	I	H	V	P
Template Known Secondary structure		S		S						S	S																				T		T	T								T	T					S	.	.	.	.	.	S							S	S						T	T	S	S	S			S
Template Predicted Secondary structure																																																	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.						.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	H	A	N	D	Y	R	Q	A	V	N	E	N	T	A	L	L	M	K	V	H	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D	V	P	V	V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A
Query Conservation
Alig confidence																																																																				.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.
Template Sequence		F	N	D	L	H	A	V	K	A	V	M	D	D	H	T	C	A	V	V	V	E	P	I	Q	G	E	G	G	V	Q	A	A	T	P	E	F	L	K	G	L	R	D	L	C	D	E	H	Q	A	L	L	V	F	D	E	V	Q	C	G	M	G	R	T	G	D	L	.	.	.	.	.	.	F	A	Y	M	H	Y	G	V
Template Known Secondary structure		T	T											T	T								S			T	T	T	T	S																			T								T	T	T	T	T	T	T	T	S	S	S	.	.	.	.	.	.	S						T
Template Predicted Secondary structure																																																																				.	.	.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.							.	240	.	.	.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	S	L	V	S	F	S	G	D	K	L	L	G	G	P	Q	A	G	I	I	V	G	K	K	E	M	I	A	R	L	Q	S	H	P	L	K	R	A	L	R	A	D	K	M	T	L	A	A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I
Query Conservation
Alig confidence														.																		.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.																		.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	P	D	I	L	T	S	A	K	A	L	G	.	G	G	F	P	V	S	A	M	L	T	T	Q	E	I	A	S	A	.	.	.	.	.	.	F	S	T	Y	G	G	N	P	L	A	C	A	V	A	G	A	A	F	D	I	I	N	T	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	Q	G	I
Template Known Secondary structure				S						G	G	G	T	.	T	T	S													T	T	.	.	.	.	.	.																						S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure														.																		.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.							.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300															.	.	.	.	.
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	Q	A	Q	R	L	Q	A	P	L	A	A	H	Y	G	A	E	F	A	V	Q	V	M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	G	S	H	L	E	S	L	A	A	R	W	R	E	L	P	V	P	V	I	G	R	I	Y	D	G	R	L
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Sequence		H	T	K	R	Q	Q	F	V	Q	H	L	Q	A	I	D	E	Q	F	D	I	F	S	D	I	R	G	M	G	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	A	E	L	K	P	K	Y	K	G	R	A	R	D	F	L	Y	A	G	A	E	A	G	V	.	M	V	L	N	A	G	A	D	V	M
Template Known Secondary structure																													T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.							G	G	G	T	T												T	T		.					S	S	T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.															.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.		.	.	.	370	.	.	.	.	.	.
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	D	L	R	C	L	E	D	E	Q	R	F	L	E	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	F	A	P	S	L	V	V	E	E	A	D	I	H	E	G	M
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions