Job Description P0A821 Confidence 99.88% Date Thu Jan 5 11:06:39 GMT 2012 Rank 121 Aligned Residues 378 % Identity 11% Template c2okkA_ PDB info PDB header:lyase Chain: A: PDB Molecule:glutamate decarboxylase 2; PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65) Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		44	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		L	D	E	A	R	E	V	I	R	G	S	.	Q	T	L	P	A	W	C	E	N	W	A	Q	E	V	D	A	R	L	T	K	E	A	Q	S	A	L	R	P	V	I	N	L	T	G	T	V	L	H	T	N	L	G	R	A	L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	R	S	P	V	T	L	E	Y	D	L
Query Conservation													.
Alig confidence													.																																.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.
Template Sequence		P	N	E	L	L	Q	E	Y	N	W	E	L	A	D	Q	P	Q	N	L	E	E	I	L	M	H	C	Q	T	T	L	K	Y	A	I	K	T	G	H	P	R	Y	F	N	.	.	.	.	.	.	.	.	Q	L	S	T	G	L	D	M	V	G	L	A	A	D	W	L	T	S	T	A	N	T	N	M	F	T	Y	E	I
Template Known Secondary structure									S						S	S																		S			T	T	S	T	T			S	.	.	.	.	.	.	.	.	S	S	S																					S	S		T	T	T
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180									.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.																.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																										.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	D	A	G	R	G	H	R	D	R	A	L	A	Q	L	L	C	R	I	T	G	A	E	D	.	.	.	.	A	C	I	V	N	N	N	A	A	A	V	L	L	M	L	A	A	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A
Query Conservation																										.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.																			.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation							.																																																																							.	.	.	.
Template Sequence		A	P	V	F	V	.	L	L	E	Y	V	T	L	K	K	M	R	E	I	I	G	W	P	G	G	S	G	D	G	I	F	S	P	G	G	A	I	S	N	M	Y	A	M	M	I	A	R	F	K	M	F	P	E	V	K	E	K	G	M	A	A	L	P	R	L	I	A	F	T	S	E	H	S	H	F	S	.	.	.	.
Template Known Secondary structure							.															T		G	G	G		S						S	S																		T	T						G	G	G	S									T	T	S		T		.	.	.	.
Template Predicted Secondary structure							.																																																																							.	.	.	.
Template SS confidence
		210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.						.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.							220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure														.	.	.	.	.																									.	.	.	.	.	.
Query SS confidence														.	.	.	.	.																									.	.	.	.	.	.
Query Sequence		F	R	I	P	D	V	M	R	Q	A	G	C	.	.	.	.	.	T	L	H	E	V	G	T	T	N	R	T	H	A	N	D	Y	R	Q	A	V	N	E	N	T	.	.	.	.	.	.	A	L	L	M	K	V	H	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D
Query Conservation														.	.	.	.	.																									.	.	.	.	.	.
Alig confidence		.	.											.	.	.	.	.																									.	.	.	.	.	.															.	.	.	.
Template Conservation		.	.																																																												.	.	.	.
Template Sequence		.	.	L	K	K	G	A	A	A	L	G	I	G	T	D	S	V	I	L	I	K	C	D	E	R	G	K	M	I	P	S	D	L	E	R	R	I	L	E	A	K	Q	K	G	F	V	P	F	L	V	S	A	T	A	G	T	T	V	Y	G	A	.	.	.	.	F	D	P	L	L	A	V	A	D	I	C	K	K	Y	K
Template Known Secondary structure		.	.								T	T	S		G	G	G						B		T	T	S		B															T	T										B	S		T	T	T			.	.	.	.	B														T
Template Predicted Secondary structure		.	.																																																												.	.	.	.
Template SS confidence
				285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.					.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	V	V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	L	V	S	F	S	G	D	K	L	L	G	G	P	Q	A	G	I	I	V	G	K	K	E	M	I	A	R	L	Q	S	H	P	L	K	R	A	L	R	A	D	K	M	T	L	A
Query Conservation
Alig confidence																														.	.	.	.	.
Template Conservation																														.	.	.	.	.
Template Sequence		I	W	M	H	V	D	A	A	W	G	G	G	L	L	M	S	R	K	H	K	W	K	L	S	G	V	E	R	.	.	.	.	.	A	N	S	V	T	W	N	P	H	M	M	G	V	P	L	Q	C	S	A	L	L	V	R	E	E	G	L	M	Q	N	C	N	Q	M	H	D	L	S	Y	D	T	G	D	K	A	L	Q
Template Known Secondary structure									T	T	G	G	G	G	G	G		T	T	T	G	G	G	G	T	T	G	G	G	.	.	.	.	.		S												S	S								S	S	T	T											G	G	G			G	G	G	S	S
Template Predicted Secondary structure																														.	.	.	.	.
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.						.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q	A	Q	R	L	Q	A	P	L	A	A	H	Y	G	A	E	F	A	V	Q	V	M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T
Query Conservation
Alig confidence		.	.	.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	C	G	R	H	V	D	V	F	K	L	W	L	M	W	R	A	K	G	T	T	G	F	E	A	H	V	D	K	C	L	E	L	A	E	Y	L	Y	N	I	I	K	N	R	E	G	Y	E	M	V	F	D	G	K	P	Q	H	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	C	F	W
Template Known Secondary structure		.	.	.	S	S																																								T	S	T	T				S	S	S	S			S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.																.	.	.	.
		413	.	.	.	.	.	.	420												.	.	.	.	.	.	.	.		.	430	.	.	.	.	.	.	.	.	.	440	.	.	.				.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.									.																.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.									.																.	.	.
Query Sequence		P	H	D	G	R	G	S	H	.	.	.	.	.	.	.	.	.	.	.	L	E	S	L	A	A	R	W	.	R	E	L	P	V	P	V	I	G	R	I	Y	D	G	R	.	.	.	L	W	L	D	L	R	C	L	E	D	E	Q	R	F	L	E	M	L	L	K
Query Conservation										.	.	.	.	.	.	.	.	.	.	.									.																.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.									.																.	.	.
Template Conservation
Template Sequence		Y	I	P	P	S	L	R	T	L	E	E	R	M	S	R	L	S	K	V	A	P	V	I	K	A	R	M	M	E	Y	G	T	T	M	V	S	Y	Q	P	L	G	D	K	V	N	F	F	R	M	V	I	S	N	P	A	A	T	H	Q	D	I	D	F	L	I	E
Template Known Secondary structure					T	T	T	T	T									T	T													T	S									T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.