Job Description P0A821 Confidence 99.86% Date Thu Jan 5 11:06:39 GMT 2012 Rank 139 Aligned Residues 340 % Identity 14% Template c2o1bA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class i; PDBTitle: structure of aminotransferase from staphylococcus aureus Resolution 1.95 Å

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		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.						.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.
Query Sequence		E	A	Q	S	A	L	R	P	V	I	N	L	T	G	T	V	L	H	T	N	L	G	R	A	L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	R	S	P	V	T	L	E	Y	D	L	D	D	A	G	R	G	H	R	D	R	A	L	A	Q	L	L	C	R	I	T	G	.	.	.	.	.	A	E	D	A	C	I
Query Conservation																																																																							.	.	.	.	.
Alig confidence															.	.	.	.	.																																				.																.	.	.	.	.
Template Conservation															.	.	.	.	.																																				.
Template Sequence		F	G	E	H	G	P	L	P	L	I	N	X	A	.	.	.	.	.	V	G	I	P	D	G	P	T	P	Q	G	I	I	D	H	F	Q	K	A	L	T	I	P	E	N	Q	K	Y	G	A	F	H	G	K	E	.	A	F	K	Q	A	I	V	D	F	Y	Q	R	Q	Y	N	V	T	L	D	K	E	D	E	V	C	I
Template Known Secondary structure		T					S	S							.	.	.	.	.			S		S	S														T	T						S				T	T				.																				T	T	T	S
Template Predicted Secondary structure															.	.	.	.	.																																				.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.						.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.				.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																		.																																								.	.	.
Query SS confidence																		.																																								.	.	.
Query Sequence		V	N	N	N	A	A	A	V	L	L	M	L	A	A	T	A	.	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C	T	L	H	E	V	G	T	T	N	.	.	.	R	T	H	A	N	D	Y	R	Q	A	V	N	E	N	T	A	L	L	M	K	V
Query Conservation																		.																																								.	.	.
Alig confidence																		.																.	.	.	.	.	.																			.	.	.
Template Conservation																																		.	.	.	.	.	.
Template Sequence		L	Y	G	T	K	N	G	L	V	A	V	P	T	C	V	I	N	P	G	D	Y	V	L	L	P	D	P	G	Y	T	D	Y	.	.	.	.	.	.	L	A	G	V	L	L	A	D	G	K	P	V	P	L	N	L	E	P	P	H	Y	L	P	D	W	S	K	V	D	S	Q	I	I	D	K	T	K	L	I	Y	L	T
Template Known Secondary structure			S	S															T	T								S			S	S		.	.	.	.	.	.							T	T										T	T	T					G	G	G	S
Template Predicted Secondary structure																																		.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.							.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.			.	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		H	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D	V	P	V	V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	L	V	S	F	S	G	D	K	L	L	G	G	P	Q	.	.	A	G
Query Conservation																																																																														.	.
Alig confidence															.																																			.	.	.	.																									.	.
Template Conservation															.																																			.	.	.	.
Template Sequence		Y	P	N	N	P	T	G	S	T	A	T	K	E	.	V	F	D	E	A	I	A	K	F	K	G	T	D	T	K	I	V	H	D	F	A	Y	G	A	F	G	F	D	A	K	N	P	S	I	.	.	.	.	L	A	S	E	N	G	K	D	V	A	I	E	I	Y	S	L	S	K	G	Y	N	X	S	G	F	R	V	G
Template Known Secondary structure		S	S		T	T	T								.										T	T	S	S								T	T	T	T		B	S	S	S					G	.	.	.	.	G	G	S	T	T											S	T	T	T	T	T		G	G	G
Template Predicted Secondary structure															.																																			.	.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.					.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	V	G	K	K	E	M	I	A	R	L	Q	S	H	P	L	K	R	A	L	R	A	D	K	M	T	L	A	A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q	A	Q	R	L	Q	A	P	L	A	A	H	Y	G	A	E	F
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	A	V	G	N	K	D	X	I	Q	A	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Y	Q	T	H	T	N	A	G	X	F	G	A	L	Q	D	A	A	I	Y	A	L	N	H	Y	D	D	F	L	E	E	Q	S	N	V	F	K	T	R	R	D	R	F	E	A	X	L	A	K	A	D
Template Known Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.																	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.		.	430	.	.	.	.	.	.	.	.						.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.		.	.
Predicted Secondary structure																																															.											.	.	.	.	.																	.
Query SS confidence																																															.											.	.	.	.	.																	.
Query Sequence		A	V	Q	V	M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	G	S	H	L	E	S	L	A	A	R	W	.	R	E	L	P	V	P	V	I	G	R	.	.	.	.	.	I	Y	D	G	R	L	W	L	D	L	R	C	L	E	D	E	.	Q	R
Query Conservation																																															.											.	.	.	.	.																	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.											.	.	.	.	.																	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	P	F	V	H	A	K	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Y	V	W	L	E	T	P	P	G	Y	D	S	E	Q	F	E	Q	F	L	V	Q	E	K	S	I	L	V	A	P	G	K	P	F	G	E	N	G	N	R	Y	V	R	I	S	L	A	L	D	D	Q	K	L	D	E
Template Known Secondary structure									B	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S								T	T																					S	G	G	G		G	G	G	T	T								S		T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		308	.	310	.	.	.	.	.	.																	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		457	.	.	460	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	E	M	L	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	I	R	L	T	E
Template Known Secondary structure								G
Template Predicted Secondary structure
Template SS confidence
		372	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions