Job Description P0A821 Confidence 99.88% Date Thu Jan 5 11:06:39 GMT 2012 Rank 119 Aligned Residues 329 % Identity 17% Template c2o0rA_ PDB info PDB header:transferase Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase); PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis Resolution 2.00 Å

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		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.						.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.
Query Sequence		V	I	N	L	T	G	T	V	L	H	T	N	L	G	R	A	L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	R	S	P	V	T	L	E	Y	D	L	D	D	A	G	R	G	H	R	D	R	A	L	A	Q	L	L	C	R	I	T	G	A	.	.	.	.	.	E	D	A	C	I	V	N	N	N	A	A	A	V
Query Conservation																																																																.	.	.	.	.
Alig confidence							.	.	.	.	.																										.										.																	.	.	.	.	.
Template Conservation							.	.	.	.	.																										.										.
Template Sequence		A	V	N	L	G	.	.	.	.	.	Q	G	F	P	D	E	D	G	P	P	K	M	L	Q	A	A	Q	D	A	I	A	G	G	V	N	.	Q	Y	P	P	G	P	G	S	A	.	P	L	R	R	A	I	A	A	Q	R	R	R	H	F	G	V	D	Y	D	P	E	T	E	V	L	V	T	V	G	A	T	E	A	I
Template Known Secondary structure					S	S	.	.	.	.	.		S	S		S	S																T	T			.	S				T	T				.																				T	T	T	S
Template Predicted Secondary structure							.	.	.	.	.																										.										.
Template SS confidence
		26	.	.	.	30						.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.						.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure										.																																									.	.	.	.	.
Query SS confidence										.																																									.	.	.	.	.
Query Sequence		L	L	M	L	A	A	T	A	.	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C	T	L	H	E	V	G	T	T	N	R	.	.	.	.	.	T	H	A	N	D	Y	R	Q	A	V	N	E	N	T	A	L	L	M	K	V	H	T	S	N	Y	S
Query Conservation										.																																									.	.	.	.	.
Alig confidence										.																.	.	.	.	.	.																				.	.	.	.	.
Template Conservation																										.	.	.	.	.	.
Template Sequence		A	A	A	V	L	G	L	V	E	P	G	S	E	V	L	L	I	E	P	F	Y	D	S	Y	.	.	.	.	.	.	S	P	V	V	A	M	A	G	A	H	R	V	T	V	P	L	V	P	D	G	R	G	F	A	L	D	A	D	A	L	R	R	A	V	T	P	R	T	R	A	L	I	I	N	S	P	H	N	P	T
Template Known Secondary structure											T	T								S			T	T		.	.	.	.	.	.							T	T												T	T															T	T								S	S		T	T	T
Template Predicted Secondary structure																										.	.	.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.							.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.
Query SS confidence																																																																								.	.
Query Sequence		I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D	V	P	V	V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	L	V	S	F	S	G	D	K	L	L	G	G	P	Q	.	.	A	G	I	I	V	G	K	K
Query Conservation																																																																								.	.
Alig confidence									.																																			.	.	.	.																									.	.
Template Conservation									.																																			.	.	.	.
Template Sequence		G	A	V	L	S	A	T	.	E	L	A	A	I	A	E	I	A	V	A	A	N	L	V	V	I	T	D	E	V	Y	E	H	L	V	F	D	H	A	R	H	L	P	.	.	.	.	L	A	G	F	D	G	M	A	E	R	T	I	T	I	S	S	A	A	M	F	N	C	T	G	W	K	I	G	W	A	C	G	P	A
Template Known Secondary structure									.												T	T								T	T	T	T		B		T	T						.	.	.	.	G	G	G	S	T	T	T	G	G	G											S		T	T	T
Template Predicted Secondary structure									.																																			.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.					.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	I	A	R	L	Q	S	H	P	L	K	R	A	L	R	A	D	K	M	T	L	A	A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q	A	Q	R	L	Q	A	P	L	A	A	H	Y	G	A	E	F	A	V	Q	V	M	P
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Sequence		E	L	I	A	G	V	R	A	A	K	Q	Y	L	S	Y	V	G	G	A	P	F	Q	P	A	V	A	L	A	L	D	T	E	D	.	.	.	.	.	.	.	.	.	.	.	.	A	W	V	A	A	L	R	N	S	L	R	A	R	R	D	R	L	A	A	G	L	T	E	I	.	.	.	.	.	G	F	A	V	H	D
Template Known Secondary structure															T	S				T	T														.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.													.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.						.	.	.	.	310	.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.		.	430	.	.	.	.	.	.	.	.	.	440									.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure																																									.													.	.	.	.	.	.	.	.
Query SS confidence																																									.													.	.	.	.	.	.	.	.
Query Sequence		C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	G	S	H	L	E	S	L	A	A	R	W	.	R	E	L	P	V	P	V	I	G	R	I	Y	.	.	.	.	.	.	.	.	D	G	R	L	W	L	D	L	R	C	L	E	D	E	Q	R	F	L	E	M
Query Conservation																																									.													.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.																							.													.	.	.	.	.	.	.	.											.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.
Template Sequence		S	Y	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	F	L	C	A	D	P	R	P	L	G	Y	D	D	S	T	E	F	C	A	A	L	P	E	K	V	G	V	A	A	I	P	M	S	A	F	C	D	P	A	D	V	W	N	H	L	V	R	F	T	F	C	K	.	.	R	D	D	T	L	D	E	A
Template Known Secondary structure				B	S	.	.	.	.	.	.	.	.	.	.	.	.	.	S							G	G	G	T																S						G	G	G	G	S						G	G	G								S	.	.
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.
Template SS confidence
		312	.	.	.														.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.			.	370	.	.	.	.	.	.
		461
Predicted Secondary structure
Query SS confidence
Query Sequence		L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		385

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions