Job Description P0A821 Confidence 99.86% Date Thu Jan 5 11:06:39 GMT 2012 Rank 140 Aligned Residues 346 % Identity 14% Template c2hdyA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:selenocysteine lyase; PDBTitle: structure of human selenocysteine lyase Resolution 2.10 Å

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		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																					.																	.																	.	.																					.	.	.	.	.
Query SS confidence																					.																	.																	.	.																					.	.	.	.	.
Query Sequence		N	L	G	R	A	L	Q	A	E	A	A	V	E	A	V	A	Q	A	M	.	R	S	P	V	T	L	E	Y	D	L	D	D	A	G	R	G	.	H	R	D	R	A	L	A	Q	L	L	C	R	I	T	G	A	.	.	E	D	A	C	I	V	N	N	N	A	A	A	V	L	L	M	L	A	A	T	.	.	.	.	.
Query Conservation																					.																	.																	.	.																					.	.	.	.	.
Alig confidence																					.																	.																	.	.																					.	.	.	.	.
Template Conservation
Template Sequence		Y	N	A	T	T	P	L	E	P	E	V	I	Q	A	M	T	K	A	M	W	E	A	W	G	N	P	S	S	P	Y	S	A	G	R	K	A	K	D	I	I	N	A	A	R	E	S	L	A	K	M	I	G	G	K	P	Q	D	I	I	F	T	S	G	G	T	E	S	N	N	L	V	I	H	S	V	V	K	H	F	H
Template Known Secondary structure		T	T	T																			S		S		T	T		S	S																						T			G	G	G					S
Template Predicted Secondary structure
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
						165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.				.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																									.	.	.
Query SS confidence		.	.	.	.																																									.	.	.
Query Sequence		.	.	.	.	A	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	V	M	R	Q	A	G	C	T	L	H	E	V	G	T	T	N	.	.	.	R	T	H	A	N	D	Y	R	Q	A	V	N	E	N	T	A	L	L	M	K	V	H	T	S	N	Y	S	I	Q	G	F	T	K
Query Conservation		.	.	.	.																																									.	.	.
Alig confidence		.	.	.	.														.	.																										.	.	.																																.	.
Template Conservation																			.	.																																																												.	.
Template Sequence		A	N	Q	T	G	A	K	P	H	F	I	T	S	S	V	E	H	.	.	D	S	I	R	L	P	L	E	H	L	V	E	E	Q	V	A	A	V	T	F	V	P	V	S	K	V	S	G	Q	T	E	V	D	D	I	L	A	A	V	R	P	T	T	R	L	V	T	I	M	L	A	N	N	E	T	G	I	V	M	.	.
Template Known Secondary structure															T	T			.	.													T	T	S										T	T	T	S	S									T			T	T								S	B		T	T	T		B	B		.	.
Template Predicted Secondary structure																			.	.																																																												.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	D	E	A	E	L	V	A	L	G	K	E	L	D	V	P	V	V	T	D	L	G	S	G	S	L	V	D	L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	L	V	S	F	S	G	D	K	L	L	G	G	P	Q	A	G	I	I	V	G	K	K	E	M	I	A	R	L	Q	S
Query Conservation
Alig confidence		.	.																																						.
Template Conservation		.	.																																						.
Template Sequence		.	.	P	V	P	E	I	S	Q	R	I	K	A	L	N	Q	E	R	V	A	A	G	L	P	P	I	L	V	H	T	D	A	A	Q	A	L	G	K	Q	.	R	V	D	V	E	D	L	G	V	D	F	L	T	I	V	G	H	K	F	Y	G	P	R	I	G	A	L	Y	I	R	G	L	G	E	F	T	P	L	Y	P
Template Known Secondary structure		.	.																			T	T											T	T	T	T	T	T	S	.										S						G	G	G	T	T	S		S							T	T	B	T	T	T	B
Template Predicted Secondary structure		.	.																																						.
Template SS confidence
				205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	P	L	K	R	A	L	R	A	D	K	M	T	L	A	A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q	A	Q	R	L	Q	A	P	L	A	A	H	Y	G	A	E	F	A	V	Q	V	M	P	C	L	S	Q	I	G	S	G
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.																																																														.
Template Conservation											.	.	.	.	.	.	.	.	.																																																														.
Template Sequence		M	L	F	G	G	G	Q	E	R	.	.	.	.	.	.	.	.	.	N	F	R	P	G	T	E	N	T	P	M	I	A	G	L	G	K	A	A	E	L	V	T	Q	N	C	E	A	Y	E	A	H	M	R	D	V	R	D	Y	L	E	E	R	L	E	A	E	F	G	Q	K	R	I	H	L	N	S	Q	F	P	G	.
Template Known Secondary structure		S			S	S		G	G	G	.	.	.	.	.	.	.	.	.	G	T	S		S																																													G	G	G				S	S			T	T	.
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.																																																														.
Template SS confidence
		282	.	.	.	.	.	.	.	290										.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.																								440	.	.	.	.	.	.	.	.	.				450	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Query Sequence		S	L	P	V	D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	G	S	H	L	E	S	L	A	A	R	W	R	E	L	P	V	P	V	I	G	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	D	G	R	L	W	L	D	L	R	.	.	.	C	L
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Alig confidence		.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	T	Q	R	L	P	N	T	C	N	F	S	I	R	G	P	R	L	Q	G	H	V	V	L	A	Q	C	R	V	L	M	A	S	V	G	A	A	C	H	S	D	H	G	D	Q	P	S	P	V	L	L	S	Y	G	V	P	F	D	V	A	R	N	A	L	R	L	S	V	G	R	S	T	T	R
Template Known Secondary structure		.	.	.	.	.	.	.			B		S	S									T	T											S	S				B	S	S	S	S			S	S		S	S									T	T								T								S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
		452	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	E	Q	R	F	L	E	M	L	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	V	D	L	V	V	Q	D	L	K	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		425	.	.	.	.	430	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions