 |
Job Description | P0A821 | Confidence | 22.38% | Date | Thu Jan 5 11:06:39 GMT 2012 |
Rank | 489 | Aligned Residues | 82 |
% Identity | 12% | Template | c1jpmB_ |
PDB info |
PDB header:isomerase | Chain: B: PDB Molecule:l-ala-d/l-glu epimerase; |
PDBTitle: l-ala-d/l-glu epimerase
|
Resolution | 2.25 Å |
|
 |
  |   |
198 | . | 200 | . | . | . | . | . | . | . | . | . | 210 | |
|
|
. | . | . | . | . | . | . | |
. | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|
|
|  |  |  | . | . | . |  |  |  |  |
|
|
| . |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | E | V | G | T | T | N | R | T | H | A | N | D | . |
. |
. |
Y | R | Q | A | V | N | E | . |
N | T | A | L | L | M | K | V | H | T | S | N | Y | S | I | Q | G | F | T | K | A | I | D | E | A | E | L | V | A | L | G | K | E | L | D | V | P | V | V | T | D | L | G | S | G | S | L | V | D | L | S | Q | Y | G | L | P |
Query Conservation |   |
  |   |
|   |   |   |   |   |   |   |   |   |   | . | . | . |   |   |   |
|
|   |   | . |   |
|   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|   |   |   |
|
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
Template Conservation |   |
|   |
|
|
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |
|
|
|
| . | . | . | . | . | . | . | . |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |
|
|
|
|   |
|
| . | . | . | . | . | . | . | . | . | . | . |   |   |   |
Template Sequence |   |
L | R | L | D | A | N | Q | G | W | R | P | K | E | A | V | T | A | I | R | K | M | E | D | A | G | L | G | I | E | L | V | E | Q | P | . |
. |
. |
. |
. |
. |
. |
. |
V | H | K | D | D | L | A | G | L | K | K | V | T | D | A | T | D | T | P | I | M | A | D | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
S | V | F |
Template Known Secondary structure |   |
 |  |  |  |
| T | T |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |
|
| . | . | . | . | . | . | . | . | S |
| T | T |
|  |  |  |  |  |  |  |  |  |  |
| S | S |
|  |  |  | S | T | . | . | . | . | . | . | . | . | . | . | . | T |
| S |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
188 | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . |
  |
  |   |
274 | . | . | . | . | . | 280 | . | . | . | . | . | |
. | . | . | . | 290 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |
|
| . |
|  |  |  |  |  |
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | E | P | M | P | Q | E | L | I | A | A | G | . |
V | S | L | V | S | F | S | G | D | K | L | L | G |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
| . |
|
|
|
|   |   |
|   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |
|
|
Template Sequence |   |
T | P | R | Q | A | F | E | V | L | Q | T | R | S | A | D | L | I | N | I | K | L | M | K | A | G | G |
Template Known Secondary structure |   |
S |  |  |  |  |  |  |  |  |  |  | T |
|
| S |  |  |  |  |
|  |  |  |  | T | S |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
249 | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|